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4B9B
Biol. Unit 2
Info
Asym.Unit (676 KB)
Biol.Unit 1 (342 KB)
Biol.Unit 2 (334 KB)
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(1)
Title
:
THE STRUCTURE OF THE OMEGA AMINOTRANSFERASE FROM PSEUDOMONAS AERUGINOSA
Authors
:
C. Sayer, M. N. Isupov, A. Westlake, J. A. Littlechild
Date
:
03 Sep 12 (Deposition) - 27 Mar 13 (Release) - 08 May 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.64
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: C,D,E,F (1x)
Biol. Unit 2: A,B,G,H (1x)
Keywords
:
Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Sayer, M. N. Isupov, A. Westlake, J. A. Littlechild
Structural Studies With Pseudomonas And Chromobacterium [Omega]-Aminotransferases Provide Insights Into Their Differing Substrate Specificity.
Acta Crystallogr. , Sect. D V. 69 564 2013
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close entry info
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
2g: CHLORIDE ION (CLg)
2h: CHLORIDE ION (CLh)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
4a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
4b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
4c: PYRIDOXAL-5'-PHOSPHATE (PLPc)
4d: PYRIDOXAL-5'-PHOSPHATE (PLPd)
4e: PYRIDOXAL-5'-PHOSPHATE (PLPe)
4f: PYRIDOXAL-5'-PHOSPHATE (PLPf)
4g: PYRIDOXAL-5'-PHOSPHATE (PLPg)
4h: PYRIDOXAL-5'-PHOSPHATE (PLPh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
GOL
6
Ligand/Ion
GLYCEROL
4
PLP
4
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
[
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]
Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: CC4 (SOFTWARE)
09: CC5 (SOFTWARE)
10: CC6 (SOFTWARE)
11: CC7 (SOFTWARE)
12: CC8 (SOFTWARE)
13: CC9 (SOFTWARE)
14: DC1 (SOFTWARE)
15: DC2 (SOFTWARE)
16: DC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:119 , GLY A:120 , SER A:121 , TYR A:153 , HIS A:154 , GLY A:155 , GLU A:226 , ASP A:259 , VAL A:261 , ILE A:262 , LYS A:288 , HOH A:2098 , HOH A:2218 , HOH A:2221 , HOH A:2300 , HOH A:2422 , HOH A:2462 , HOH A:2487 , HOH A:2647 , HOH A:2648 , TYR B:326 , THR B:327
BINDING SITE FOR RESIDUE PLP A 500
02
AC2
SOFTWARE
THR A:193 , ALA A:197 , GLN A:198 , THR A:199 , HOH A:2649 , HOH A:2650
BINDING SITE FOR RESIDUE GOL A 501
03
AC3
SOFTWARE
SER A:323 , HOH A:2509 , HOH A:2511 , MET B:172 , PHE B:173
BINDING SITE FOR RESIDUE CL A 502
04
AC4
SOFTWARE
ALA A:150 , HIS A:181 , PRO A:183 , HOH A:2347 , HOH A:2351 , HOH A:2652 , HOH A:2653 , HOH A:2654 , LYS G:210 , LEU G:211
BINDING SITE FOR RESIDUE GOL A 504
05
AC5
SOFTWARE
TYR A:326 , THR A:327 , HOH A:2513 , HOH A:2514 , HOH A:2515 , HOH A:2517 , SER B:119 , GLY B:120 , SER B:121 , TYR B:153 , HIS B:154 , GLY B:155 , GLU B:226 , ASP B:259 , VAL B:261 , ILE B:262 , LYS B:288 , HOH B:2164 , HOH B:2166 , HOH B:2228 , HOH B:2343 , HOH B:2398
BINDING SITE FOR RESIDUE PLP B 500
06
AC6
SOFTWARE
MET A:172 , PHE A:173 , SER B:323 , HOH B:2418 , HOH B:2419
BINDING SITE FOR RESIDUE CL B 502
07
AC7
SOFTWARE
ALA B:150 , HIS B:181 , PRO B:183 , HOH B:2275 , HOH B:2279 , HOH B:2534 , HOH B:2535 , HOH B:2536 , LYS H:210 , LEU H:211 , LEU H:214
BINDING SITE FOR RESIDUE GOL B 504
08
CC4
SOFTWARE
SER G:119 , GLY G:120 , SER G:121 , TYR G:153 , HIS G:154 , GLY G:155 , GLU G:226 , ASP G:259 , VAL G:261 , ILE G:262 , LYS G:288 , HOH G:2172 , HOH G:2173 , HOH G:2176 , HOH G:2237 , HOH G:2239 , HOH G:2325 , HOH G:2383 , HOH G:2530 , HOH G:2531 , TYR H:326 , THR H:327
BINDING SITE FOR RESIDUE PLP G 500
09
CC5
SOFTWARE
SER G:323 , HOH G:2404 , HOH G:2407 , MET H:172 , PHE H:173
BINDING SITE FOR RESIDUE CL G 502
10
CC6
SOFTWARE
ASP A:180 , HOH A:2346 , HOH A:2347 , HOH A:2348 , ASP G:180 , HOH G:2265
BINDING SITE FOR RESIDUE CA G 503
11
CC7
SOFTWARE
LYS A:210 , LEU A:211 , HOH A:2346 , HOH A:2400 , HOH A:2403 , HIS G:181 , PRO G:183 , HOH G:2267 , HOH G:2532
BINDING SITE FOR RESIDUE GOL G 504
12
CC8
SOFTWARE
TYR G:326 , THR G:327 , HOH G:2409 , HOH G:2410 , HOH G:2411 , HOH G:2413 , SER H:119 , GLY H:120 , SER H:121 , TYR H:153 , HIS H:154 , GLY H:155 , GLU H:226 , ASP H:259 , VAL H:261 , ILE H:262 , LYS H:288 , HOH H:2141 , HOH H:2143 , HOH H:2189 , HOH H:2266 , HOH H:2321
BINDING SITE FOR RESIDUE PLP H 500
13
CC9
SOFTWARE
THR H:193 , ALA H:197 , GLN H:198 , THR H:199 , HOH H:2436 , HOH H:2437
BINDING SITE FOR RESIDUE GOL H 501
14
DC1
SOFTWARE
MET G:172 , PHE G:173 , SER H:323 , HOH H:2340 , HOH H:2342
BINDING SITE FOR RESIDUE CL H 502
15
DC2
SOFTWARE
ASP B:180 , HOH B:2274 , HOH B:2275 , HOH B:2276 , ASP H:180 , HOH H:2209
BINDING SITE FOR RESIDUE CA H 503
16
DC3
SOFTWARE
LYS B:210 , HOH B:2276 , HOH B:2318 , HOH B:2324 , HIS H:181 , PRO H:183 , HOH H:2209 , HOH H:2211 , HOH H:2439
BINDING SITE FOR RESIDUE GOL H 504
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: AA_TRANSFER_CLASS_3 (A:256-293,B:256-293,G:256-293,H:25...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
AA_TRANSFER_CLASS_3
PS00600
Aminotransferases class-III pyridoxal-phosphate attachment site.
BAUA_PSEAE
256-293
4
A:256-293
B:256-293
-
-
-
-
G:256-293
H:256-293
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
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Sorry, no Info available
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Pfam Domains
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Info
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Sorry, no Info available
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (676 KB)
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Header - Biol.Unit 1
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