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4B8T
Asym. Unit
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Asym.Unit (574 KB)
Biol.Unit 1 (30 KB)
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Models
(20 )
Title
:
RNA BINDING PROTEIN SOLUTION STRUCTURE OF THE THIRD KH DOMAIN OF KSRP IN COMPLEX WITH THE G-RICH TARGET SEQUENCE.
Authors
:
G. Nicastro, M. F. Garcia-Mayoral, D. Hollingworth, G. Kelly, S. R. Mar P. Briata, R. Gherzi, A. Ramos
Date
:
30 Aug 12 (Deposition) - 07 Nov 12 (Release) - 16 Jan 13 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B (20 x)
Biol. Unit 1: A,B (1x)
Keywords
:
Transcription-Rna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Nicastro, M. F. Garcia-Mayoral, D. Hollingworth, G. Kelly, S. R. Martin, P. Briata, R. Gherzi, A. Ramos
Noncanonical G Recognition Mediates Ksrp Regulation Of Let-7 Biogenesis
Nat. Struct. Mol. Biol. V. 19 1282 2012
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: KH_TYPE_1 (-|-|A:10-74|-)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
KH_TYPE_1
PS50084
Type-1 KH domain profile.
FUBP2_HUMAN
144-208
233-299
322-386
424-491
1
-
-
A:10-74
-
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Exons
(4, 4)
Info
All Exons
Exon 1.10 (A:1-14 (gaps))
Exon 1.11 (A:15-49)
Exon 1.12b (A:49-82)
Exon 1.13 (A:83-106)
View:
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All Exon Boundaries
1: Boundary 1.9/1.10
2: Boundary 1.10/1.11
3: Boundary 1.11/1.12b
4: Boundary 1.12b/1.13
5: Boundary 1.13/1.14
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000398148
1a
ENSE00001561079
chr19:
6424822-6424464
359
FUBP2_HUMAN
1-83
83
0
-
-
1.2
ENST00000398148
2
ENSE00001160298
chr19:
6422447-6422351
97
FUBP2_HUMAN
84-116
33
0
-
-
1.3
ENST00000398148
3
ENSE00001160287
chr19:
6421699-6421661
39
FUBP2_HUMAN
116-129
14
0
-
-
1.4
ENST00000398148
4
ENSE00001160276
chr19:
6421328-6421289
40
FUBP2_HUMAN
129-142
14
0
-
-
1.5
ENST00000398148
5
ENSE00001160266
chr19:
6420482-6420433
50
FUBP2_HUMAN
142-159
18
0
-
-
1.6
ENST00000398148
6
ENSE00001160257
chr19:
6420155-6420084
72
FUBP2_HUMAN
159-183
25
0
-
-
1.7
ENST00000398148
7
ENSE00001160249
chr19:
6419271-6419214
58
FUBP2_HUMAN
183-202
20
0
-
-
1.8
ENST00000398148
8
ENSE00001160243
chr19:
6418887-6418713
175
FUBP2_HUMAN
202-260
59
0
-
-
1.9
ENST00000398148
9
ENSE00001160234
chr19:
6418592-6418494
99
FUBP2_HUMAN
261-293
33
0
-
-
1.10
ENST00000398148
10
ENSE00001160227
chr19:
6418090-6417992
99
FUBP2_HUMAN
294-326
33
1
A:1-14 (gaps)
18
1.11
ENST00000398148
11
ENSE00001160220
chr19:
6417852-6417750
103
FUBP2_HUMAN
327-361
35
1
A:15-49
35
1.12b
ENST00000398148
12b
ENSE00001160213
chr19:
6417098-6416998
101
FUBP2_HUMAN
361-394
34
1
A:49-82
34
1.13
ENST00000398148
13
ENSE00001160204
chr19:
6416893-6416749
145
FUBP2_HUMAN
395-443
49
1
A:83-106
24
1.14
ENST00000398148
14
ENSE00001160198
chr19:
6416661-6416501
161
FUBP2_HUMAN
443-496
54
0
-
-
1.15
ENST00000398148
15
ENSE00001160189
chr19:
6416418-6416309
110
FUBP2_HUMAN
497-533
37
0
-
-
1.16
ENST00000398148
16
ENSE00001160181
chr19:
6415907-6415819
89
FUBP2_HUMAN
533-563
31
0
-
-
1.17
ENST00000398148
17
ENSE00001160174
chr19:
6415745-6415545
201
FUBP2_HUMAN
563-630
68
0
-
-
1.18
ENST00000398148
18
ENSE00001060055
chr19:
6415468-6415391
78
FUBP2_HUMAN
630-656
27
0
-
-
1.19b
ENST00000398148
19b
ENSE00001531832
chr19:
6415312-6415152
161
FUBP2_HUMAN
656-709
54
0
-
-
1.22a
ENST00000398148
22a
ENSE00001531829
chr19:
6414131-6413121
1011
FUBP2_HUMAN
710-711
2
0
-
-
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Asym.Unit (574 KB)
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