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4B7S
Asym. Unit
Info
Asym.Unit (152 KB)
Biol.Unit 1 (75 KB)
Biol.Unit 2 (73 KB)
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(1)
Title
:
PIKC D50N MUTANT BOUND TO THE 10-DML ANALOG WITH THE 3-(N,N-DIMETHYLAMINO)PROPANOATE ANCHORING GROUP
Authors
:
L. M. Podust
Date
:
21 Aug 12 (Deposition) - 28 Aug 13 (Release) - 16 Apr 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.84
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Oxidoreductase, Monooxygenase, Pikromycin Biosynthesis, Inhibitor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Negretti, A. R. H. Narayan, K. C. Chiou, P. M. Kells, J. L. Stachowski D. A. Hansen, L. M. Podust, J. Montgomery, D. H. Sherman
Directing Group-Controlled Regioselectivity In An Enzymatic C-H Bond Oxygenation.
J. Am. Chem. Soc. V. 136 4901 2014
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Hetero Components
(4, 19)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3a: [(3R,4S,5S,7R,9E,11R,12R)-12-ETHYL... (QLEa)
3b: [(3R,4S,5S,7R,9E,11R,12R)-12-ETHYL... (QLEb)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
7
Ligand/Ion
GLYCEROL
2
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
QLE
2
Ligand/Ion
[(3R,4S,5S,7R,9E,11R,12R)-12-ETHYL-3,5,7,11-TETRAMETHYL-2,8-BIS(OXIDANYLIDENE)-1-XACYCLODODEC-9-EN-4-YL] 3-(DIMETHYLAMINO)PROPANOATE
4
SO4
8
Ligand/Ion
SULFATE ION
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Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:72 , MET A:92 , LEU A:93 , HIS A:100 , ARG A:104 , PHE A:111 , ILE A:157 , GLY A:244 , THR A:247 , THR A:248 , LEU A:251 , PRO A:289 , ALA A:293 , THR A:294 , ARG A:296 , ALA A:346 , PHE A:347 , GLY A:348 , ILE A:351 , HIS A:352 , CYS A:354 , ILE A:355 , GLY A:356 , ALA A:360 , HOH A:2373
BINDING SITE FOR RESIDUE HEM A1407
02
AC2
SOFTWARE
GLU A:85 , GLU A:94 , PHE A:178 , VAL A:179 , HIS A:238 , ILE A:239 , VAL A:242 , ALA A:243 , THR A:294 , MET A:394 , ILE A:395 , GOL A:1415
BINDING SITE FOR RESIDUE QLE A1408
03
AC3
SOFTWARE
MET B:92 , LEU B:93 , HIS B:100 , ARG B:104 , PHE B:111 , ALA B:243 , GLY B:244 , THR B:247 , THR B:248 , LEU B:251 , PRO B:289 , ALA B:293 , THR B:294 , ARG B:296 , ALA B:346 , PHE B:347 , GLY B:348 , ILE B:351 , HIS B:352 , CYS B:354 , ILE B:355 , ALA B:360 , HOH B:2307
BINDING SITE FOR RESIDUE HEM B1407
04
AC4
SOFTWARE
GLU B:85 , ASN B:89 , LEU B:93 , GLU B:94 , PHE B:178 , VAL B:179 , HIS B:238 , ILE B:239 , VAL B:242 , ALA B:243 , GLU B:246 , THR B:247 , THR B:294 , MET B:394 , ILE B:395 , GOL B:1411 , HOH B:2194
BINDING SITE FOR RESIDUE QLE B1408
05
AC5
SOFTWARE
LEU A:106 , THR A:220 , ARG A:227
BINDING SITE FOR RESIDUE SO4 A1409
06
AC6
SOFTWARE
ARG A:114 , ARG A:115 , HOH A:2186
BINDING SITE FOR RESIDUE SO4 A1410
07
AC7
SOFTWARE
VAL A:173 , GLU A:193 , HOH A:2396 , HOH A:2397 , HOH A:2398 , ARG B:75
BINDING SITE FOR RESIDUE SO4 A1411
08
AC8
SOFTWARE
THR B:112 , ARG B:114 , HOH B:2143
BINDING SITE FOR RESIDUE SO4 B1409
09
AC9
SOFTWARE
HIS B:262 , PRO B:263 , ASP B:264 , GLN B:265 , ARG B:334
BINDING SITE FOR RESIDUE SO4 B1410
10
BC1
SOFTWARE
ARG A:36 , PRO A:326 , HOH A:2044
BINDING SITE FOR RESIDUE SO4 A1412
11
BC2
SOFTWARE
ARG A:75 , HIS A:90 , ARG A:99 , HOH A:2117 , HOH A:2157
BINDING SITE FOR RESIDUE SO4 A1413
12
BC3
SOFTWARE
GLU A:223 , ASP A:224 , HOH A:2304
BINDING SITE FOR RESIDUE SO4 A1414
13
BC4
SOFTWARE
THR A:294 , TYR A:295 , QLE A:1408 , HOH A:2122
BINDING SITE FOR RESIDUE GOL A1415
14
BC5
SOFTWARE
THR B:294 , TYR B:295 , MET B:394 , QLE B:1408 , HOH B:2115
BINDING SITE FOR RESIDUE GOL B1411
15
BC6
SOFTWARE
PRO A:98 , ARG A:99 , ARG A:102 , HOH A:2167 , HOH A:2399
BINDING SITE FOR RESIDUE GOL A1416
16
BC7
SOFTWARE
TYR A:29 , ASN A:254 , TYR A:257 , TYR A:286 , GLU A:287 , ARG A:324 , TRP A:389 , ARG A:396 , HOH A:2339
BINDING SITE FOR RESIDUE GOL A1417
17
BC8
SOFTWARE
ARG A:361 , ARG A:365 , HOH A:2382
BINDING SITE FOR RESIDUE GOL A1418
18
BC9
SOFTWARE
ARG A:62 , HIS A:349 , HOH A:2401 , HOH A:2402
BINDING SITE FOR RESIDUE GOL A1419
19
CC1
SOFTWARE
VAL A:14 , LEU A:15 , ARG A:34 , GLU A:38 , HOH A:2048
BINDING SITE FOR RESIDUE GOL A1420
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: CYTOCHROME_P450 (A:347-356,B:347-356)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTOCHROME_P450
PS00086
Cytochrome P450 cysteine heme-iron ligand signature.
PIKC_STRVZ
347-356
2
A:347-356
B:347-356
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
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Asym.Unit (152 KB)
Header - Asym.Unit
Biol.Unit 1 (75 KB)
Header - Biol.Unit 1
Biol.Unit 2 (73 KB)
Header - Biol.Unit 2
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