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4B7R
Asym. Unit
Info
Asym.Unit (525 KB)
Biol.Unit 1 (511 KB)
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(1)
Title
:
H1N1 2009 PANDEMIC INFLUENZA VIRUS: RESISTANCE OF THE I223R NEURAMINIDASE MUTANT EXPLAINED BY KINETIC AND STRUCTURAL ANALYSIS
Authors
:
J. Liu, E. Van Der Vries, S. G. Vachieri, X. Xiong, P. J. Collins, P. A. W L. F. Haire, A. J. Hay, M. Schutten, A. D. M. E. Osterhaus, S. R. Martin, C. A. B. Boucher, J. J. Skehel, S. J. Gamblin
Date
:
21 Aug 12 (Deposition) - 03 Oct 12 (Release) - 17 Jul 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Hydrolase, Neuraminidase Inhibitor, Nai, Nais, Zanamivir, Resistance, Antiviral Resistance
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Van Der Vries, P. J. Collins, S. G. Vachieri, X. Xiong, J. Liu, P. A. Walker, L. F. Haire, A. J. Hay, M. Schutten, A. D. M. E. Osterhaus, S. R. Martin, C. A. B. Boucher, J. J. Skehel, S. J. Gamblin
H1N1 2009 Pandemic Influenza Virus: Resistance Of The I223R Neuraminidase Mutant Explained By Kinetic And Structural Analysis
Plos Pathog. V. 8 2914 2012
[
close entry info
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Hetero Components
(4, 30)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
2a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
2b: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEb)
2c: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEc)
2d: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEd)
3a: 5-N-ACETYL-3-(1-ETHYLPROPYL)-1-CYC... (G39a)
3b: 5-N-ACETYL-3-(1-ETHYLPROPYL)-1-CYC... (G39b)
3c: 5-N-ACETYL-3-(1-ETHYLPROPYL)-1-CYC... (G39c)
3d: 5-N-ACETYL-3-(1-ETHYLPROPYL)-1-CYC... (G39d)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
8
Ligand/Ion
CALCIUM ION
2
EPE
4
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3
G39
4
Ligand/Ion
5-N-ACETYL-3-(1-ETHYLPROPYL)-1-CYCLOHEXENE-1-CARBOXYLICACID
4
NAG
14
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(29, 29)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:294 , GLY A:298 , ASP A:324 , GLY A:342 , ASN A:344 , HOH A:2157
BINDING SITE FOR RESIDUE CA A 501
02
AC2
SOFTWARE
ASP A:376 , ASN A:378 , ASP A:384 , ASN A:386 , HOH A:2186 , HOH A:2187
BINDING SITE FOR RESIDUE CA A 502
03
AC3
SOFTWARE
ARG A:118 , GLU A:119 , ASP A:151 , ARG A:152 , ARG A:225 , ARG A:293 , ASN A:295 , ARG A:368 , TYR A:402 , EPE A:901 , HOH A:2092 , HOH A:2131 , HOH A:2222
BINDING SITE FOR RESIDUE G39 A 801
04
AC4
SOFTWARE
ILE A:149 , LYS A:150 , ASP A:151 , G39 A:801 , HOH A:2062 , HOH A:2063 , HOH A:2184 , HOH A:2223
BINDING SITE FOR RESIDUE EPE A 901
05
AC5
SOFTWARE
ASP B:294 , GLY B:298 , ASP B:324 , GLY B:342 , ASN B:344 , HOH B:2151
BINDING SITE FOR RESIDUE CA B 501
06
AC6
SOFTWARE
ASP B:376 , ASN B:378 , ASP B:384 , ASN B:386 , HOH B:2199 , HOH B:2200
BINDING SITE FOR RESIDUE CA B 502
07
AC7
SOFTWARE
ARG B:118 , GLU B:119 , ASP B:151 , ARG B:152 , ARG B:225 , GLU B:277 , ARG B:293 , ASN B:295 , ARG B:368 , TYR B:402 , EPE B:901 , HOH B:2083 , HOH B:2119 , HOH B:2252
BINDING SITE FOR RESIDUE G39 B 801
08
AC8
SOFTWARE
ILE B:149 , LYS B:150 , ASP B:151 , G39 B:801 , HOH B:2059 , HOH B:2060 , HOH B:2198
BINDING SITE FOR RESIDUE EPE B 901
09
AC9
SOFTWARE
ASP C:294 , GLY C:298 , ASP C:324 , GLY C:342 , ASN C:344 , HOH C:2162
BINDING SITE FOR RESIDUE CA C 501
10
BC1
SOFTWARE
ASP C:376 , ASN C:378 , ASP C:384 , ASN C:386 , HOH C:2210 , HOH C:2211
BINDING SITE FOR RESIDUE CA C 502
11
BC2
SOFTWARE
ARG C:118 , GLU C:119 , ASP C:151 , ARG C:152 , ARG C:225 , ARG C:293 , ASN C:295 , ARG C:368 , TYR C:402 , EPE C:901 , HOH C:2088 , HOH C:2123 , HOH C:2158 , HOH C:2263
BINDING SITE FOR RESIDUE G39 C 801
12
BC3
SOFTWARE
ILE C:149 , LYS C:150 , ASP C:151 , ARG C:368 , G39 C:801 , HOH C:2068 , HOH C:2207 , HOH C:2264
BINDING SITE FOR RESIDUE EPE C 901
13
BC4
SOFTWARE
ASN A:222 , PRO A:246 , ASP C:384 , ASN C:386 , HOH C:2218
BINDING SITE FOR RESIDUE NAG C1386
14
BC5
SOFTWARE
ASP D:294 , GLY D:298 , ASP D:324 , GLY D:342 , ASN D:344 , HOH D:2133
BINDING SITE FOR RESIDUE CA D 501
15
BC6
SOFTWARE
ASP D:376 , ASN D:378 , ASP D:384 , ASN D:386 , HOH D:2171 , HOH D:2172
BINDING SITE FOR RESIDUE CA D 502
16
BC7
SOFTWARE
ARG D:118 , GLU D:119 , ASP D:151 , ARG D:152 , ARG D:225 , GLU D:277 , GLU D:278 , ARG D:293 , ASN D:295 , ARG D:368 , TYR D:402 , EPE D:901 , HOH D:2060 , HOH D:2074 , HOH D:2103 , HOH D:2210
BINDING SITE FOR RESIDUE G39 D 801
17
BC8
SOFTWARE
ILE D:149 , LYS D:150 , ASP D:151 , ARG D:368 , G39 D:801 , HOH D:2056 , HOH D:2058 , HOH D:2169 , HOH D:2211
BINDING SITE FOR RESIDUE EPE D 901
18
BC9
SOFTWARE
ASN A:88
BINDING SITE FOR MONO-SACCHARIDE NAG A1088 BOUND TO ASN A 88
19
CC1
SOFTWARE
ASN A:146 , HOH A:2224
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 146 RESIDUES 1146 TO 1147
20
CC2
SOFTWARE
LYS A:84 , ASN A:235
BINDING SITE FOR MONO-SACCHARIDE NAG A1235 BOUND TO ASN A 235
21
CC3
SOFTWARE
ASN B:88 , SER B:89
BINDING SITE FOR MONO-SACCHARIDE NAG B1088 BOUND TO ASN B 88
22
CC4
SOFTWARE
ASN B:146
BINDING SITE FOR MONO-SACCHARIDE NAG B1146 BOUND TO ASN B 146
23
CC5
SOFTWARE
LYS B:84 , ASN B:235
BINDING SITE FOR MONO-SACCHARIDE NAG B1235 BOUND TO ASN B 235
24
CC6
SOFTWARE
ASN C:88
BINDING SITE FOR MONO-SACCHARIDE NAG C1088 BOUND TO ASN C 88
25
CC7
SOFTWARE
ASN C:146 , HOH C:2265
BINDING SITE FOR MONO-SACCHARIDE NAG C1146 BOUND TO ASN C 146
26
CC8
SOFTWARE
LYS C:84 , ASN C:235
BINDING SITE FOR MONO-SACCHARIDE NAG C1235 BOUND TO ASN C 235
27
CC9
SOFTWARE
ASN D:88
BINDING SITE FOR MONO-SACCHARIDE NAG D1088 BOUND TO ASN D 88
28
DC1
SOFTWARE
ASN D:146 , HOH D:2212 , HOH D:2213
BINDING SITE FOR MONO-SACCHARIDE NAG D1146 BOUND TO ASN D 146
29
DC2
SOFTWARE
LYS D:84 , ASN D:235 , HOH D:2214
BINDING SITE FOR MONO-SACCHARIDE NAG D1235 BOUND TO ASN D 235
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4b7ra_ (A:)
1b: SCOP_d4b7rb_ (B:)
1c: SCOP_d4b7rc_ (C:)
1d: SCOP_d4b7rd_ (D:)
View:
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Classes
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)
(
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Folds
(
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(
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Superfamilies
(
)
(
)
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Sialidases
(238)
Family
:
automated matches
(54)
Protein domain
:
automated matches
(54)
Influenza a virus (a/california/07/2009(h1n1)) [TaxId: 641809]
(2)
1a
d4b7ra_
A:
1b
d4b7rb_
B:
1c
d4b7rc_
C:
1d
d4b7rd_
D:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
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Protein & NOT Site
Protein & NOT PROSITE
Chain A
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Chain C
Chain D
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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