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Getting 'Biological Unit' information from database.
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4B7Q
Asym. Unit
Info
Asym.Unit (514 KB)
Biol.Unit 1 (502 KB)
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(1)
Title
:
H1N1 2009 PANDEMIC INFLUENZA VIRUS: RESISTANCE OF THE I223R NEURAMINIDASE MUTANT EXPLAINED BY KINETIC AND STRUCTURAL ANALYSIS
Authors
:
J. Liu, E. Van Der Vries, S. G. Vachieri, X. Xiong, P. J. Collins, P. A. W L. F. Haire, A. J. Hay, M. Schutten, A. D. M. E. Osterhaus, S. R. Martin, C. A. B. Boucher, J. J. Skehel, S. J. Gamblin
Date
:
21 Aug 12 (Deposition) - 03 Oct 12 (Release) - 10 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.73
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Hydrolase, Neuraminidase Inhibitor, Nai, Nais, Oseltamivir, Antiviral Resistance
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Van Der Vries, P. J. Collins, S. G. Vachieri, X. Xiong, J. Liu, P. A. Walker, L. F. Haire, A. J. Hay, M. Schutten, A. D. M. E. Osterhaus, S. R. Martin, C. A. B. Boucher, J. J. Skehel, S. J. Gamblin
H1N1 2009 Pandemic Influenza Virus: Resistance Of The I223R Neuraminidase Mutant Explained By Kinetic And Structural Analysis
Plos Pathog. V. 8 2914 2012
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Hetero Components
(3, 17)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3a: ZANAMIVIR (ZMRa)
3b: ZANAMIVIR (ZMRb)
3c: ZANAMIVIR (ZMRc)
3d: ZANAMIVIR (ZMRd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
5
Ligand/Ion
CALCIUM ION
2
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
ZMR
4
Ligand/Ion
ZANAMIVIR
[
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:118 , GLU A:119 , ASP A:151 , ARG A:152 , ARG A:156 , TRP A:179 , ARG A:225 , GLU A:228 , SER A:247 , GLU A:277 , GLU A:278 , ARG A:293 , ASN A:295 , ARG A:368 , TYR A:402 , HOH A:2086
BINDING SITE FOR RESIDUE ZMR A 601
02
AC2
SOFTWARE
ASP A:294 , GLY A:298 , ASP A:324 , GLY A:342 , ASN A:344
BINDING SITE FOR RESIDUE CA A 701
03
AC3
SOFTWARE
ASP A:376 , ASN A:378 , ASP A:384 , ASN A:386
BINDING SITE FOR RESIDUE CA A 702
04
AC4
SOFTWARE
ARG B:118 , GLU B:119 , ASP B:151 , ARG B:152 , ARG B:156 , TRP B:179 , ARG B:225 , GLU B:228 , SER B:247 , GLU B:277 , ARG B:293 , ASN B:295 , ARG B:368 , TYR B:402 , HOH B:2036
BINDING SITE FOR RESIDUE ZMR B 601
05
AC5
SOFTWARE
ASP B:294 , GLY B:298 , ASP B:324 , GLY B:342 , ASN B:344 , HOH B:2052
BINDING SITE FOR RESIDUE CA B 701
06
AC6
SOFTWARE
ARG C:118 , GLU C:119 , ASP C:151 , ARG C:152 , ARG C:156 , TRP C:179 , GLU C:228 , SER C:247 , GLU C:277 , GLU C:278 , ARG C:293 , ARG C:368 , TYR C:402 , HOH C:2046
BINDING SITE FOR RESIDUE ZMR C 601
07
AC7
SOFTWARE
ASP C:294 , GLY C:298 , ASP C:324 , GLY C:342 , ASN C:344
BINDING SITE FOR RESIDUE CA C 701
08
AC8
SOFTWARE
ARG D:118 , GLU D:119 , ASP D:151 , ARG D:152 , ARG D:156 , TRP D:179 , ARG D:225 , SER D:247 , GLU D:277 , GLU D:278 , ARG D:293 , ARG D:368 , TYR D:402 , HOH D:2042 , HOH D:2043
BINDING SITE FOR RESIDUE ZMR D 601
09
AC9
SOFTWARE
ASP D:294 , GLY D:298 , ASP D:324 , GLY D:342 , ASN D:344
BINDING SITE FOR RESIDUE CA D 701
10
BC1
SOFTWARE
ASN A:146 , HOH D:2085
BINDING SITE FOR MONO-SACCHARIDE NAG A 511 BOUND TO ASN A 146
11
BC2
SOFTWARE
ASN B:88
BINDING SITE FOR MONO-SACCHARIDE NAG B 501 BOUND TO ASN B 88
12
BC3
SOFTWARE
ASN B:146 , ILE B:467 , HOH B:2020
BINDING SITE FOR MONO-SACCHARIDE NAG B 511 BOUND TO ASN B 146
13
BC4
SOFTWARE
ALA C:86 , ASN C:88 , HOH C:2118
BINDING SITE FOR MONO-SACCHARIDE NAG C 501 BOUND TO ASN C 88
14
BC5
SOFTWARE
ASN C:146 , HOH C:2025 , HOH C:2119
BINDING SITE FOR MONO-SACCHARIDE NAG C 511 BOUND TO ASN C 146
15
BC6
SOFTWARE
LYS C:84 , ASN C:235
BINDING SITE FOR MONO-SACCHARIDE NAG C 521 BOUND TO ASN C 235
16
BC7
SOFTWARE
ASN D:88
BINDING SITE FOR MONO-SACCHARIDE NAG D 501 BOUND TO ASN D 88
17
BC8
SOFTWARE
ASN D:146
BINDING SITE FOR MONO-SACCHARIDE NAG D 511 BOUND TO ASN D 146
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4b7qa_ (A:)
1b: SCOP_d4b7qb_ (B:)
1c: SCOP_d4b7qc_ (C:)
1d: SCOP_d4b7qd_ (D:)
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Protein Domains
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Organisms
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)
Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Sialidases
(238)
Family
:
automated matches
(54)
Protein domain
:
automated matches
(54)
Influenza a virus (a/california/07/2009(h1n1)) [TaxId: 641809]
(2)
1a
d4b7qa_
A:
1b
d4b7qb_
B:
1c
d4b7qc_
C:
1d
d4b7qd_
D:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
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all PFAM domains
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Sorry, no Info available
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Chain A
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Chain C
Chain D
Asymmetric Unit 1
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Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
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Asym.Unit (514 KB)
Header - Asym.Unit
Biol.Unit 1 (502 KB)
Header - Biol.Unit 1
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