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4B6D
Asym. Unit
Info
Asym.Unit (129 KB)
Biol.Unit 1 (23 KB)
Biol.Unit 2 (22 KB)
Biol.Unit 3 (23 KB)
Biol.Unit 4 (23 KB)
Biol.Unit 5 (22 KB)
Biol.Unit 6 (23 KB)
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(1)
Title
:
STRUCTURE OF THE ATYPICAL C1 DOMAIN OF MGCRACGAP
Authors
:
V. E. Pye, S. Lekomtsev, M. Petronczki, P. Cherepanov
Date
:
09 Aug 12 (Deposition) - 12 Dec 12 (Release) - 23 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Keywords
:
Signaling Protein, Cytokinesis, Plasma Membrane, Phospholipids, Centralspindlin, Spindle Midzone, Central Spindle, Midbody
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Lekomtsev, K. Su, V. E. Pye, K. Blight, S. Sundaramoorthy, T. Takaki L. M. Collinson, P. Cherepanov, N. Divecha, M. Petronczki
Centralspindlin Links The Mitotic Spindle To The Plasma Membrane During Cytokinesis.
Nature V. 492 276 2012
[
close entry info
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Hetero Components
(2, 13)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
2e: ZINC ION (ZNe)
2f: ZINC ION (ZNf)
2g: ZINC ION (ZNg)
2h: ZINC ION (ZNh)
2i: ZINC ION (ZNi)
2j: ZINC ION (ZNj)
2k: ZINC ION (ZNk)
2l: ZINC ION (ZNl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
1
Ligand/Ion
GLYCEROL
2
ZN
12
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:287 , CYS A:319 , VAL A:321 , PRO A:332 , PRO A:334 , CYS A:335 , ILE A:336 , HOH A:2028 , GLY D:279 , PRO D:280
BINDING SITE FOR RESIDUE GOL A1339
02
AC2
SOFTWARE
CYS A:300 , CYS A:303 , HIS A:324 , CYS A:327
BINDING SITE FOR RESIDUE ZN A1340
03
AC3
SOFTWARE
HIS A:287 , CYS A:316 , CYS A:319 , CYS A:335
BINDING SITE FOR RESIDUE ZN A1341
04
AC4
SOFTWARE
CYS B:300 , CYS B:303 , HIS B:324 , CYS B:327
BINDING SITE FOR RESIDUE ZN B1339
05
AC5
SOFTWARE
HIS B:287 , CYS B:316 , CYS B:319 , CYS B:335
BINDING SITE FOR RESIDUE ZN B1340
06
AC6
SOFTWARE
CYS C:300 , CYS C:303 , HIS C:324 , CYS C:327
BINDING SITE FOR RESIDUE ZN C1339
07
AC7
SOFTWARE
HIS C:287 , CYS C:316 , CYS C:319 , CYS C:335
BINDING SITE FOR RESIDUE ZN C1340
08
AC8
SOFTWARE
CYS D:300 , CYS D:303 , HIS D:324 , CYS D:327
BINDING SITE FOR RESIDUE ZN D1339
09
AC9
SOFTWARE
HIS D:287 , CYS D:316 , CYS D:319 , CYS D:335
BINDING SITE FOR RESIDUE ZN D1340
10
BC1
SOFTWARE
CYS E:300 , CYS E:303 , HIS E:324 , CYS E:327
BINDING SITE FOR RESIDUE ZN E1339
11
BC2
SOFTWARE
HIS E:287 , CYS E:316 , CYS E:319 , CYS E:335
BINDING SITE FOR RESIDUE ZN E1340
12
BC3
SOFTWARE
CYS F:300 , CYS F:303 , HIS F:324 , CYS F:327
BINDING SITE FOR RESIDUE ZN F1339
13
BC4
SOFTWARE
HIS F:287 , CYS F:316 , CYS F:319 , CYS F:335
BINDING SITE FOR RESIDUE ZN F1340
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(2, 12)
Info
All PROSITE Patterns/Profiles
1: ZF_DAG_PE_2 (A:286-335,B:286-335,C:286-335,D:28...)
2: ZF_DAG_PE_1 (A:287-335,B:287-335,C:287-335,D:28...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZF_DAG_PE_2
PS50081
Zinc finger phorbol-ester/DAG-type profile.
RGAP1_HUMAN
286-335
6
A:286-335
B:286-335
C:286-335
D:286-335
E:286-335
F:286-335
2
ZF_DAG_PE_1
PS00479
Zinc finger phorbol-ester/DAG-type signature.
RGAP1_HUMAN
287-335
6
A:287-335
B:287-335
C:287-335
D:287-335
E:287-335
F:287-335
[
close PROSITE info
]
Exons
(3, 16)
Info
All Exons
Exon 1.10 (A:279-281 | - | C:279-281 | D:279-...)
Exon 1.11 (A:282-293 | B:282-293 | C:282-293 ...)
Exon 1.12 (A:294-338 | B:294-338 | C:294-338 ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.9/1.10
2: Boundary 1.10/1.11
3: Boundary 1.11/1.12
4: Boundary 1.12/1.13
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000312377
1c
ENSE00001561968
chr12:
50419226-50419181
46
RGAP1_HUMAN
-
0
0
-
-
1.4b
ENST00000312377
4b
ENSE00001211806
chr12:
50410502-50410414
89
RGAP1_HUMAN
1-29
29
0
-
-
1.5
ENST00000312377
5
ENSE00001162854
chr12:
50400419-50400217
203
RGAP1_HUMAN
29-96
68
0
-
-
1.6
ENST00000312377
6
ENSE00001114528
chr12:
50399175-50399039
137
RGAP1_HUMAN
97-142
46
0
-
-
1.7
ENST00000312377
7
ENSE00001114502
chr12:
50398087-50398018
70
RGAP1_HUMAN
142-165
24
0
-
-
1.8
ENST00000312377
8
ENSE00001162837
chr12:
50396083-50396030
54
RGAP1_HUMAN
166-183
18
0
-
-
1.9
ENST00000312377
9
ENSE00001162833
chr12:
50395035-50394955
81
RGAP1_HUMAN
184-210
27
0
-
-
1.10
ENST00000312377
10
ENSE00001162829
chr12:
50393516-50393399
118
RGAP1_HUMAN
211-250
40
4
A:279-281
-
C:279-281
D:279-281
-
F:279-281
3
-
3
3
-
3
1.11
ENST00000312377
11
ENSE00001060419
chr12:
50393054-50392924
131
RGAP1_HUMAN
250-293
44
6
A:282-293
B:282-293
C:282-293
D:282-293
E:282-293
F:282-293
12
12
12
12
12
12
1.12
ENST00000312377
12
ENSE00001162819
chr12:
50390987-50390823
165
RGAP1_HUMAN
294-348
55
6
A:294-338
B:294-338
C:294-338
D:294-338
E:294-338
F:294-338
45
45
45
45
45
45
1.13
ENST00000312377
13
ENSE00001060414
chr12:
50388292-50388197
96
RGAP1_HUMAN
349-380
32
0
-
-
1.14
ENST00000312377
14
ENSE00001060411
chr12:
50388112-50387914
199
RGAP1_HUMAN
381-447
67
0
-
-
1.15
ENST00000312377
15
ENSE00001162806
chr12:
50386438-50386333
106
RGAP1_HUMAN
447-482
36
0
-
-
1.16
ENST00000312377
16
ENSE00001162799
chr12:
50386160-50386028
133
RGAP1_HUMAN
482-526
45
0
-
-
1.17
ENST00000312377
17
ENSE00001162793
chr12:
50385916-50385781
136
RGAP1_HUMAN
527-572
46
0
-
-
1.18
ENST00000312377
18
ENSE00001162785
chr12:
50384575-50384467
109
RGAP1_HUMAN
572-608
37
0
-
-
1.19a
ENST00000312377
19a
ENSE00001362495
chr12:
50384126-50382947
1180
RGAP1_HUMAN
608-632
25
0
-
-
[
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]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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Chain F
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