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4B5W
Asym. Unit
Info
Asym.Unit (493 KB)
Biol.Unit 1 (485 KB)
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(1)
Title
:
CRYSTAL STRUCTURES OF DIVALENT METAL DEPENDENT PYRUVATE ALDOLASE R70A MUTANT, HPAI, IN COMPLEX WITH PYRUVATE
Authors
:
M. Coincon, W. Wang, S. Y. K. Seah, J. Sygusch
Date
:
07 Aug 12 (Deposition) - 29 Aug 12 (Release) - 12 Jul 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.79
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Coincon, W. Wang, J. Sygusch, S. Y. K. Seah
Crystal Structure Of Reaction Intermediates In Pyruvate Class Ii Aldolase: Substrate Cleavage, Enolate Stabilizatio And Substrate Specificity
J. Biol. Chem. V. 287 36208 2012
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Hetero Components
(3, 17)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
2a: COBALT (II) ION (COa)
2b: COBALT (II) ION (COb)
2c: COBALT (II) ION (COc)
2d: COBALT (II) ION (COd)
2e: COBALT (II) ION (COe)
2f: COBALT (II) ION (COf)
3a: PYRUVIC ACID (PYRa)
3b: PYRUVIC ACID (PYRb)
3c: PYRUVIC ACID (PYRc)
3d: PYRUVIC ACID (PYRd)
3e: PYRUVIC ACID (PYRe)
3f: PYRUVIC ACID (PYRf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
5
Ligand/Ion
CALCIUM ION
2
CO
6
Ligand/Ion
COBALT (II) ION
3
PYR
6
Ligand/Ion
PYRUVIC ACID
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:149 , ASP A:175 , PYR A:1259 , HOH A:2088 , HOH A:2093
BINDING SITE FOR RESIDUE CO A 1257
02
AC2
SOFTWARE
ASP A:133 , LYS A:137 , HOH A:2243 , GLU E:196
BINDING SITE FOR RESIDUE CA A 1258
03
AC3
SOFTWARE
GLN A:147 , GLU A:149 , PHE A:170 , GLY A:172 , PRO A:173 , ALA A:174 , ASP A:175 , CO A:1257 , HOH A:2088 , HOH A:2093 , HOH A:2365
BINDING SITE FOR RESIDUE PYR A 1259
04
AC4
SOFTWARE
GLU B:149 , ASP B:175 , PYR B:1255 , HOH B:2093 , HOH B:2097
BINDING SITE FOR RESIDUE CO B 1254
05
AC5
SOFTWARE
GLN B:147 , GLU B:149 , PHE B:170 , GLY B:172 , PRO B:173 , ALA B:174 , ASP B:175 , CO B:1254 , HOH B:2093 , HOH B:2097 , HOH B:2322
BINDING SITE FOR RESIDUE PYR B 1255
06
AC6
SOFTWARE
HOH A:2225 , GLU C:149 , ASP C:175 , PYR C:1255 , HOH C:2073
BINDING SITE FOR RESIDUE CO C 1253
07
AC7
SOFTWARE
ASP C:162 , HOH C:2207 , HOH C:2289
BINDING SITE FOR RESIDUE CA C 1254
08
AC8
SOFTWARE
HOH A:2225 , GLN C:147 , GLU C:149 , PHE C:170 , GLY C:172 , PRO C:173 , ALA C:174 , ASP C:175 , CO C:1253 , HOH C:2073 , HOH C:2290
BINDING SITE FOR RESIDUE PYR C 1255
09
AC9
SOFTWARE
GLU D:149 , ASP D:175 , PYR D:1256 , HOH D:2057 , HOH D:2063
BINDING SITE FOR RESIDUE CO D 1254
10
BC1
SOFTWARE
HOH A:2354 , HOH A:2355 , ASP D:37 , HOH D:2042 , HOH D:2043 , HOH D:2047
BINDING SITE FOR RESIDUE CA D 1255
11
BC2
SOFTWARE
GLN D:147 , GLU D:149 , PHE D:170 , GLY D:172 , PRO D:173 , ALA D:174 , ASP D:175 , CO D:1254 , HOH D:2057 , HOH D:2063 , HOH D:2239
BINDING SITE FOR RESIDUE PYR D 1256
12
BC3
SOFTWARE
GLU E:149 , ASP E:175 , PYR E:1258 , HOH E:2077 , HOH E:2082
BINDING SITE FOR RESIDUE CO E 1256
13
BC4
SOFTWARE
ASP E:162 , HOH E:2224 , HOH E:2305
BINDING SITE FOR RESIDUE CA E 1257
14
BC5
SOFTWARE
GLN E:147 , GLU E:149 , GLY E:172 , PRO E:173 , ALA E:174 , ASP E:175 , CO E:1256 , HOH E:2077 , HOH E:2082 , HOH E:2306
BINDING SITE FOR RESIDUE PYR E 1258
15
BC6
SOFTWARE
HOH D:2189 , GLU F:149 , ASP F:175 , PYR F:1257 , HOH F:2050
BINDING SITE FOR RESIDUE CO F 1255
16
BC7
SOFTWARE
MET B:1 , GLU B:2 , HOH B:2002 , HOH B:2004 , ASP F:140 , HOH F:2163
BINDING SITE FOR RESIDUE CA F 1256
17
BC8
SOFTWARE
HOH D:2189 , GLN F:147 , GLU F:149 , PHE F:170 , GLY F:172 , PRO F:173 , ALA F:174 , ASP F:175 , CO F:1255 , HOH F:2050 , HOH F:2248
BINDING SITE FOR RESIDUE PYR F 1257
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Asymmetric Unit 1
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Asym.Unit (493 KB)
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