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4B4X
Asym. Unit
Info
Asym.Unit (287 KB)
Biol.Unit 1 (74 KB)
Biol.Unit 2 (73 KB)
Biol.Unit 3 (74 KB)
Biol.Unit 4 (75 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A COMPLEX BETWEEN ACTINOMADURA R39 DD-PEPTIDASE AND A SULFONAMIDE BORONATE INHIBITOR
Authors
:
S. E. Cannella, E. Sauvage, R. Herman, F. Kerff, M. Rocaboy, P. Charlier
Date
:
01 Aug 12 (Deposition) - 21 Aug 13 (Release) - 21 Aug 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.65
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Hydrolase, Peptidoglycan
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Sauvage
Crystal Structure Of A Complex Between Actinomadura R39 Dd-Peptidase And A Boronate Inhibitor
To Be Published
[
close entry info
]
Hetero Components
(3, 32)
Info
All Hetero Components
1a: TRIHYDROXY{(1S)-1-[(METHYLSULFONYL... (HQZa)
1b: TRIHYDROXY{(1S)-1-[(METHYLSULFONYL... (HQZb)
1c: TRIHYDROXY{(1S)-1-[(METHYLSULFONYL... (HQZc)
1d: TRIHYDROXY{(1S)-1-[(METHYLSULFONYL... (HQZd)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
3p: SULFATE ION (SO4p)
3q: SULFATE ION (SO4q)
3r: SULFATE ION (SO4r)
3s: SULFATE ION (SO4s)
3t: SULFATE ION (SO4t)
3u: SULFATE ION (SO4u)
3v: SULFATE ION (SO4v)
3w: SULFATE ION (SO4w)
3x: SULFATE ION (SO4x)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
HQZ
4
Ligand/Ion
TRIHYDROXY{(1S)-1-[(METHYLSULFONYL)AMINO]ETHYL}BORATE(1-)
2
MG
4
Ligand/Ion
MAGNESIUM ION
3
SO4
24
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(32, 32)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:49 , TYR A:147 , SER A:298 , ASN A:300 , THR A:413 , MET A:414 , HOH A:2068 , GLU B:176
BINDING SITE FOR RESIDUE HQZ A 500
02
AC2
SOFTWARE
HIS A:282 , THR A:283 , HOH A:2087
BINDING SITE FOR RESIDUE SO4 A1467
03
AC3
SOFTWARE
ALA A:234 , LEU A:235 , ARG A:236 , HOH A:2054 , HOH A:2088
BINDING SITE FOR RESIDUE SO4 A1468
04
AC4
SOFTWARE
SER A:131 , GLU A:132 , ARG A:133 , LEU A:134
BINDING SITE FOR RESIDUE SO4 A1469
05
AC5
SOFTWARE
HIS A:158 , GLU A:168 , HOH A:2037 , HOH A:2090
BINDING SITE FOR RESIDUE SO4 A1470
06
AC6
SOFTWARE
ALA A:186 , GLU A:188 , HIS A:247 , GLU A:251
BINDING SITE FOR RESIDUE MG A1471
07
AC7
SOFTWARE
VAL A:406 , HIS A:462
BINDING SITE FOR RESIDUE MG A1472
08
AC8
SOFTWARE
GLU A:101 , HIS A:158 , GLY A:159
BINDING SITE FOR RESIDUE SO4 A1473
09
AC9
SOFTWARE
THR A:97 , ASP A:102 , HIS A:282
BINDING SITE FOR RESIDUE SO4 A1474
10
BC1
SOFTWARE
SER B:49 , TYR B:147 , SER B:298 , ASN B:300 , GLY B:412 , THR B:413 , HOH B:2053
BINDING SITE FOR RESIDUE HQZ B 500
11
BC2
SOFTWARE
HIS B:282 , THR B:283
BINDING SITE FOR RESIDUE SO4 B1466
12
BC3
SOFTWARE
ALA B:234 , ARG B:236 , HOH B:2047
BINDING SITE FOR RESIDUE SO4 B1467
13
BC4
SOFTWARE
SER B:131 , GLU B:132 , ARG B:133 , LEU B:134
BINDING SITE FOR RESIDUE SO4 B1468
14
BC5
SOFTWARE
HIS B:158 , GLY B:159 , SO4 B:1470
BINDING SITE FOR RESIDUE SO4 B1469
15
BC6
SOFTWARE
GLY A:203 , HIS B:158 , GLU B:168 , SO4 B:1469 , HOH B:2033 , HOH B:2066
BINDING SITE FOR RESIDUE SO4 B1470
16
BC7
SOFTWARE
ASP B:95 , THR B:97 , ASP B:102 , HIS B:282 , SER B:284
BINDING SITE FOR RESIDUE SO4 B1471
17
BC8
SOFTWARE
ALA C:48 , SER C:49 , TYR C:147 , SER C:298 , ASN C:300 , LEU C:349 , GLY C:412 , THR C:413
BINDING SITE FOR RESIDUE HQZ C 500
18
BC9
SOFTWARE
ASP C:95 , THR C:97 , ASP C:102 , HIS C:282
BINDING SITE FOR RESIDUE SO4 C1466
19
CC1
SOFTWARE
ARG C:236 , HOH C:2072
BINDING SITE FOR RESIDUE SO4 C1467
20
CC2
SOFTWARE
SER C:131 , ARG C:133 , LEU C:134
BINDING SITE FOR RESIDUE SO4 C1468
21
CC3
SOFTWARE
GLY C:159 , GLU C:160 , ARG C:161 , HOH C:2034
BINDING SITE FOR RESIDUE SO4 C1469
22
CC4
SOFTWARE
ASP C:281 , HIS C:282 , THR C:283
BINDING SITE FOR RESIDUE SO4 C1470
23
CC5
SOFTWARE
HIS C:158 , GLY C:159
BINDING SITE FOR RESIDUE SO4 C1471
24
CC6
SOFTWARE
SER D:49 , TYR D:147 , SER D:298 , ASN D:300 , THR D:413 , HOH D:2105
BINDING SITE FOR RESIDUE HQZ D 500
25
CC7
SOFTWARE
HIS D:282 , THR D:283 , HOH D:2077
BINDING SITE FOR RESIDUE SO4 D1467
26
CC8
SOFTWARE
ALA D:234 , ARG D:236 , HOH D:2066 , HOH D:2106
BINDING SITE FOR RESIDUE SO4 D1468
27
CC9
SOFTWARE
SER D:131 , GLU D:132 , ARG D:133 , LEU D:134 , HOH D:2107
BINDING SITE FOR RESIDUE SO4 D1469
28
DC1
SOFTWARE
HIS D:158 , GLU D:168 , SO4 D:1473
BINDING SITE FOR RESIDUE SO4 D1470
29
DC2
SOFTWARE
GLU D:188 , HIS D:247 , GLU D:251
BINDING SITE FOR RESIDUE MG D1471
30
DC3
SOFTWARE
HIS D:462
BINDING SITE FOR RESIDUE MG D1472
31
DC4
SOFTWARE
HIS D:158 , GLY D:159 , SO4 D:1470
BINDING SITE FOR RESIDUE SO4 D1473
32
DC5
SOFTWARE
ASP D:95 , THR D:97 , ASP D:102 , HIS D:282 , SER D:284 , ALA D:285
BINDING SITE FOR RESIDUE SO4 D1474
[
close Site info
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4b4xa_ (A:)
1b: SCOP_d4b4xb_ (B:)
1c: SCOP_d4b4xc_ (C:)
1d: SCOP_d4b4xd_ (D:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
beta-lactamase/transpeptidase-like
(515)
Superfamily
:
beta-lactamase/transpeptidase-like
(515)
Family
:
Dac-like
(29)
Protein domain
:
D-alanyl-D-alanine carboxypeptidase Dac
(17)
Actinomadura sp. [TaxId: 1989]
(17)
1a
d4b4xa_
A:
1b
d4b4xb_
B:
1c
d4b4xc_
C:
1d
d4b4xd_
D:
[
close SCOP info
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain C
Chain D
Asymmetric Unit 1
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Asym.Unit (287 KB)
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