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4B3W
Asym. Unit
Info
Asym.Unit (116 KB)
Biol.Unit 1 (110 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN CYTOGLOBIN H(E7)Q MUTANT
Authors
:
M. Gabba, S. Abbruzzetti, F. Spyrakis, F. Forti, S. Bruno, A. Mozzarell F. J. Luque, C. Viappiani, P. Cozzini, M. Nardini, F. Germani, M. Bolog L. Moens, S. Dewilde
Date
:
26 Jul 12 (Deposition) - 23 Jan 13 (Release) - 23 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Oxygen Transport, Metal Binding Protein, Heme Hexacoordination, Protein Cavity
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Gabba, S. Abbruzzetti, F. Spyrakis, F. Forti, S. Bruno, A. Mozzarelli, F. J. Luque, C. Viappiani, P. Cozzini, M. Nardini, F. Germani, M. Bolognesi, L. Moens, S. Dewilde
Co Rebinding Kinetics And Molecular Dynamics Simulations Highlight Dynamic Regulation Of Internal Cavities In Human Cytoglobin.
Plos One V. 8 49770 2013
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Hetero Components
(4, 7)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: CYANIDE ION (CYNa)
2b: CYANIDE ION (CYNb)
3a: HEXACYANOFERRATE(3-) (FC6a)
3b: HEXACYANOFERRATE(3-) (FC6b)
4a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
4b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
CYN
2
Ligand/Ion
CYANIDE ION
3
FC6
2
Ligand/Ion
HEXACYANOFERRATE(3-)
4
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:49 , TYR A:59 , PHE A:60 , GLN A:81 , ARG A:84 , LEU A:89 , HIS A:113 , HIS A:117 , VAL A:119 , TYR A:123 , PHE A:124 , LEU A:127 , CYN A:300 , HOH A:2011
BINDING SITE FOR RESIDUE HEM A 200
2
AC2
SOFTWARE
GLN A:81 , VAL A:85 , HEM A:200
BINDING SITE FOR RESIDUE CYN A 300
3
AC3
SOFTWARE
LYS A:125 , ARG A:155 , GLY A:156 , TYR A:159 , PRO B:54 , SER B:55
BINDING SITE FOR RESIDUE FC6 A 400
4
AC4
SOFTWARE
GLU A:137 , GLU A:138 , ALA A:140 , SER A:141 , TYR B:59 , PHE B:60 , GLN B:62 , GLN B:81 , ARG B:84 , ALA B:88 , HIS B:113 , HIS B:117 , VAL B:119 , TYR B:123 , PHE B:124 , CYN B:300
BINDING SITE FOR RESIDUE HEM B 200
5
AC5
SOFTWARE
GLN B:81 , VAL B:85 , HEM B:200
BINDING SITE FOR RESIDUE CYN B 300
6
AC6
SOFTWARE
PHE A:53 , PRO A:54 , SER A:55 , LYS B:125 , ARG B:155 , GLY B:156 , TYR B:159
BINDING SITE FOR RESIDUE FC6 B 400
7
AC7
SOFTWARE
GLN B:77
BINDING SITE FOR RESIDUE ACT B1172
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: GLOBIN (A:19-158,B:19-158)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLOBIN
PS01033
Globin family profile.
CYGB_HUMAN
19-158
2
A:19-158
B:19-158
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Exons
(3, 6)
Info
All Exons
Exon 1.1 (A:18-48 | B:18-48)
Exon 1.2 (A:48-125 | B:48-125)
Exon 1.3 (A:126-171 | B:126-171)
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000293230
1
ENSE00001246500
chr17:
74533966-74533482
485
CYGB_HUMAN
1-48
48
2
A:18-48
B:18-48
31
31
1.2
ENST00000293230
2
ENSE00001058643
chr17:
74527773-74527542
232
CYGB_HUMAN
48-125
78
2
A:48-125
B:48-125
78
78
1.3
ENST00000293230
3
ENSE00001118062
chr17:
74527224-74527061
164
CYGB_HUMAN
126-180
55
2
A:126-171
B:126-171
46
46
1.4
ENST00000293230
4
ENSE00001193939
chr17:
74524693-74523461
1233
CYGB_HUMAN
180-190
11
0
-
-
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4b3wa_ (A:)
1b: SCOP_d4b3wb_ (B:)
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Classes
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)
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)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Globin-like
(1351)
Superfamily
:
Globin-like
(1308)
Family
:
Globins
(1157)
Protein domain
:
automated matches
(99)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d4b3wa_
A:
1b
d4b3wb_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Sorry, no Info available
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Chain A
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Asymmetric Unit 1
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