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4B3V
Biol. Unit 3
Info
Asym.Unit (443 KB)
Biol.Unit 1 (151 KB)
Biol.Unit 2 (148 KB)
Biol.Unit 3 (148 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE RUBELLA VIRUS GLYCOPROTEIN E1 IN ITS POST-FUSION FORM CRYSTALLIZED IN PRESENCE OF 20MM OF CALCIUM ACETATE
Authors
:
M. C. Vaney, R. M. Dubois, M. A. Tortorici, F. A. Rey
Date
:
26 Jul 12 (Deposition) - 09 Jan 13 (Release) - 14 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.98
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Viral Protein, Envelope Glycoprotein, Membrane Fusion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. M. Dubois, M. C. Vaney, M. A. Tortorici, R. A. Kurdi, G. Barba-Spaeth T. Krey, F. A. Rey
Functional And Evolutionary Insight From The Crystal Structure Of Rubella Virus Protein E1.
Nature V. 493 552 2013
(for further references see the
PDB file header
)
[
close entry info
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Hetero Components
(5, 12)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
3k: GLYCEROL (GOLk)
3l: GLYCEROL (GOLl)
3m: GLYCEROL (GOLm)
3n: GLYCEROL (GOLn)
3o: GLYCEROL (GOLo)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4a: SODIUM ION (NAa)
6a: N-ACETYL-D-GALACTOSAMINE (NGAa)
6b: N-ACETYL-D-GALACTOSAMINE (NGAb)
7a: DI(HYDROXYETHYL)ETHER (PEGa)
7b: DI(HYDROXYETHYL)ETHER (PEGb)
7c: DI(HYDROXYETHYL)ETHER (PEGc)
7d: DI(HYDROXYETHYL)ETHER (PEGd)
8a: TETRAETHYLENE GLYCOL (PG4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
2
Ligand/Ion
ACETATE ION
2
CA
-1
Ligand/Ion
CALCIUM ION
3
GOL
5
Ligand/Ion
GLYCEROL
4
NA
-1
Ligand/Ion
SODIUM ION
5
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
NGA
1
Ligand/Ion
N-ACETYL-D-GALACTOSAMINE
7
PEG
2
Ligand/Ion
DI(HYDROXYETHYL)ETHER
8
PG4
-1
Ligand/Ion
TETRAETHYLENE GLYCOL
[
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]
Sites
(19, 19)
Info
All Sites
01: AC2 (SOFTWARE)
02: AC7 (SOFTWARE)
03: AC8 (SOFTWARE)
04: BC4 (SOFTWARE)
05: BC6 (SOFTWARE)
06: BC8 (SOFTWARE)
07: CC4 (SOFTWARE)
08: CC5 (SOFTWARE)
09: CC6 (SOFTWARE)
10: CC7 (SOFTWARE)
11: CC8 (SOFTWARE)
12: CC9 (SOFTWARE)
13: DC1 (SOFTWARE)
14: DC2 (SOFTWARE)
15: DC3 (SOFTWARE)
16: DC4 (SOFTWARE)
17: DC8 (SOFTWARE)
18: DC9 (SOFTWARE)
19: EC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC2
SOFTWARE
ARG A:256 , LEU A:257 , ASP A:262 , HOH A:2417 , LYS C:110
BINDING SITE FOR RESIDUE GOL A 1439
02
AC7
SOFTWARE
THR A:9 , ALA A:10 , PG4 A:1447 , HOH A:2420 , PHE C:380 , THR C:387
BINDING SITE FOR RESIDUE ACT A 1445
03
AC8
SOFTWARE
ASP A:314 , HIS A:317 , ACT A:1445 , HOH A:2331 , ALA C:388
BINDING SITE FOR RESIDUE PG4 A 1447
04
BC4
SOFTWARE
THR B:347 , PRO B:355 , LEU B:357 , HOH B:2375 , HOH B:2376 , HOH B:2377 , ARG C:217 , THR C:311 , THR C:312
BINDING SITE FOR RESIDUE GOL B 1438
05
BC6
SOFTWARE
THR B:78 , GLN B:79 , ARG B:252 , ALA C:268 , HIS C:298
BINDING SITE FOR RESIDUE GOL B 1440
06
BC8
SOFTWARE
ARG B:80 , ALA B:81 , CYS B:82 , ALA B:116 , GLU B:118 , ARG B:252 , HOH B:2086 , HOH B:2115 , ARG C:256 , LEU C:264
BINDING SITE FOR RESIDUE GOL B 1442
07
CC4
SOFTWARE
GLY C:93 , GLY C:94 , TYR C:95 , ALA C:96 , GLN C:97 , LEU C:98 , TYR C:101 , ARG C:342 , GOL C:1440 , HOH C:2332
BINDING SITE FOR RESIDUE GOL C 1439
08
CC5
SOFTWARE
TYR C:95 , TYR C:101 , TYR C:112 , ARG C:342 , ALA C:362 , PRO C:363 , GLY C:364 , GOL C:1439
BINDING SITE FOR RESIDUE GOL C 1440
09
CC6
SOFTWARE
HIS A:308 , THR A:311 , THR A:312 , PRO C:355 , LEU C:357 , HOH C:2333
BINDING SITE FOR RESIDUE GOL C 1441
10
CC7
SOFTWARE
LYS B:110 , HOH B:2115 , ARG C:256 , LEU C:257 , ASP C:262 , HOH C:2233
BINDING SITE FOR RESIDUE GOL C 1442
11
CC8
SOFTWARE
SER C:100 , TYR C:101 , TYR C:108 , HOH C:2111
BINDING SITE FOR RESIDUE GOL C 1443
12
CC9
SOFTWARE
ASN C:88 , THR C:135 , ASP C:136 , THR C:137 , CA C:1446 , HOH C:2128
BINDING SITE FOR RESIDUE ACT C 1444
13
DC1
SOFTWARE
TYR C:90 , SER C:92 , ASP C:136
BINDING SITE FOR RESIDUE ACT C 1445
14
DC2
SOFTWARE
ASN C:88 , ALA C:89 , ASP C:136 , THR C:137 , ACT C:1444 , HOH C:2093
BINDING SITE FOR RESIDUE CA C 1446
15
DC3
SOFTWARE
SER B:433 , HOH B:2369 , GLY C:63 , TRP C:65 , VAL C:66 , PRO C:67 , THR C:68
BINDING SITE FOR RESIDUE PEG C 1447
16
DC4
SOFTWARE
GLU C:52 , ILE C:53 , THR C:55 , ASP C:56 , GLY C:61 , TYR C:90 , GLN C:97
BINDING SITE FOR RESIDUE PEG C 1448
17
DC8
SOFTWARE
ASN C:76
BINDING SITE FOR MONO-SACCHARIDE NAG C1437 BOUND TO ASN C 76
18
DC9
SOFTWARE
GLN C:168 , SER C:175 , ASN C:177
BINDING SITE FOR MONO-SACCHARIDE NAG C1436 BOUND TO ASN C 177
19
EC1
SOFTWARE
THR A:46 , HOH A:2067 , THR C:430 , ALA C:431 , VAL C:432
BINDING SITE FOR MONO-SACCHARIDE NGA C1438 BOUND TO THR C 430
[
close Site info
]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_POLS_RUBVM_005 (R27G, chain C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_POLS_RUBVM_005
*
R
609
G
POLS_RUBVM
---
---
C
R
27
G
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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Atom Selection
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)
Protein
Nucleic
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Hetero
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Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain C
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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Show PDB file:
Asym.Unit (443 KB)
Header - Asym.Unit
Biol.Unit 1 (151 KB)
Header - Biol.Unit 1
Biol.Unit 2 (148 KB)
Header - Biol.Unit 2
Biol.Unit 3 (148 KB)
Header - Biol.Unit 3
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