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4B3V
Biol. Unit 1
Info
Asym.Unit (443 KB)
Biol.Unit 1 (151 KB)
Biol.Unit 2 (148 KB)
Biol.Unit 3 (148 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE RUBELLA VIRUS GLYCOPROTEIN E1 IN ITS POST-FUSION FORM CRYSTALLIZED IN PRESENCE OF 20MM OF CALCIUM ACETATE
Authors
:
M. C. Vaney, R. M. Dubois, M. A. Tortorici, F. A. Rey
Date
:
26 Jul 12 (Deposition) - 09 Jan 13 (Release) - 14 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.98
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Viral Protein, Envelope Glycoprotein, Membrane Fusion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. M. Dubois, M. C. Vaney, M. A. Tortorici, R. A. Kurdi, G. Barba-Spaeth T. Krey, F. A. Rey
Functional And Evolutionary Insight From The Crystal Structure Of Rubella Virus Protein E1.
Nature V. 493 552 2013
(for further references see the
PDB file header
)
[
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Hetero Components
(6, 11)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
3k: GLYCEROL (GOLk)
3l: GLYCEROL (GOLl)
3m: GLYCEROL (GOLm)
3n: GLYCEROL (GOLn)
3o: GLYCEROL (GOLo)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4a: SODIUM ION (NAa)
6a: N-ACETYL-D-GALACTOSAMINE (NGAa)
6b: N-ACETYL-D-GALACTOSAMINE (NGAb)
7a: DI(HYDROXYETHYL)ETHER (PEGa)
7b: DI(HYDROXYETHYL)ETHER (PEGb)
7c: DI(HYDROXYETHYL)ETHER (PEGc)
7d: DI(HYDROXYETHYL)ETHER (PEGd)
8a: TETRAETHYLENE GLYCOL (PG4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
3
Ligand/Ion
ACETATE ION
2
CA
-1
Ligand/Ion
CALCIUM ION
3
GOL
4
Ligand/Ion
GLYCEROL
4
NA
-1
Ligand/Ion
SODIUM ION
5
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
NGA
1
Ligand/Ion
N-ACETYL-D-GALACTOSAMINE
7
PEG
1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
8
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
[
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: CC6 (SOFTWARE)
13: DC5 (SOFTWARE)
14: DC6 (SOFTWARE)
15: EC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:80 , ALA A:81 , CYS A:82 , ALA A:116 , GLU A:118 , HOH A:2108 , ARG B:256 , LEU B:264
BINDING SITE FOR RESIDUE GOL A 1438
02
AC2
SOFTWARE
ARG A:256 , LEU A:257 , ASP A:262 , HOH A:2417 , LYS C:110
BINDING SITE FOR RESIDUE GOL A 1439
03
AC3
SOFTWARE
THR A:347 , PRO A:355 , LEU A:357 , ARG B:217 , HIS B:308 , THR B:311
BINDING SITE FOR RESIDUE GOL A 1440
04
AC4
SOFTWARE
SER A:100 , TYR A:108
BINDING SITE FOR RESIDUE GOL A 1441
05
AC5
SOFTWARE
SER A:91 , SER A:92 , ASP A:136
BINDING SITE FOR RESIDUE ACT A 1443
06
AC6
SOFTWARE
GLY A:93 , GLY A:94 , ARG A:342 , GLY A:364
BINDING SITE FOR RESIDUE ACT A 1444
07
AC7
SOFTWARE
THR A:9 , ALA A:10 , PG4 A:1447 , HOH A:2420 , PHE C:380 , THR C:387
BINDING SITE FOR RESIDUE ACT A 1445
08
AC8
SOFTWARE
ASP A:314 , HIS A:317 , ACT A:1445 , HOH A:2331 , ALA C:388
BINDING SITE FOR RESIDUE PG4 A 1447
09
AC9
SOFTWARE
GLU A:52 , ILE A:53 , TYR A:90 , GLY A:94 , GLN A:97 , HOH A:2074
BINDING SITE FOR RESIDUE PEG A 1449
10
BC1
SOFTWARE
ASN A:88 , ALA A:89 , ASP A:136 , THR A:137 , HOH A:2118
BINDING SITE FOR RESIDUE NA A 1450
11
BC2
SOFTWARE
ASN A:88 , ALA A:89 , ASP A:136 , THR A:137 , HOH A:2118
BINDING SITE FOR RESIDUE CA A 1451
12
CC6
SOFTWARE
HIS A:308 , THR A:311 , THR A:312 , PRO C:355 , LEU C:357 , HOH C:2333
BINDING SITE FOR RESIDUE GOL C 1441
13
DC5
SOFTWARE
GLN A:168 , SER A:175 , ASN A:177
BINDING SITE FOR MONO-SACCHARIDE NAG A1436 BOUND TO ASN A 177
14
DC6
SOFTWARE
THR A:430 , ALA A:431 , VAL A:432 , HOH A:2416 , THR B:46
BINDING SITE FOR MONO-SACCHARIDE NGA A1437 BOUND TO THR A 430
15
EC1
SOFTWARE
THR A:46 , HOH A:2067 , THR C:430 , ALA C:431 , VAL C:432
BINDING SITE FOR MONO-SACCHARIDE NGA C1438 BOUND TO THR C 430
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_POLS_RUBVM_005 (R27G, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_POLS_RUBVM_005
*
R
609
G
POLS_RUBVM
---
---
A
R
27
G
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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Sorry, no Info available
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Sorry, no Info available
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Protein & NOT Site
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Chain A
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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Show PDB file:
Asym.Unit (443 KB)
Header - Asym.Unit
Biol.Unit 1 (151 KB)
Header - Biol.Unit 1
Biol.Unit 2 (148 KB)
Header - Biol.Unit 2
Biol.Unit 3 (148 KB)
Header - Biol.Unit 3
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