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Getting 'Hetero Component' information from database.
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Getting 'Site' information from database.
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Getting 'PROSITE' information from database.
4B3E
Biol. Unit 5
Info
Asym.Unit (500 KB)
Biol.Unit 1 (103 KB)
Biol.Unit 2 (103 KB)
Biol.Unit 3 (102 KB)
Biol.Unit 4 (103 KB)
Biol.Unit 5 (101 KB)
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(1)
Title
:
STRUCTURE OF COPPER-ZINC SUPEROXIDE DISMUTASE COMPLEXED WITH BICARBONATE.
Authors
:
R. W. Strange, M. A. Hough, S. V. Antonyuk, S. S. Hasnain
Date
:
23 Jul 12 (Deposition) - 26 Sep 12 (Release) - 26 Sep 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,F (1x)
Biol. Unit 2: B,G (1x)
Biol. Unit 3: C,H (1x)
Biol. Unit 4: D,I (1x)
Biol. Unit 5: E,J (1x)
Keywords
:
Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. W. Strange, M. A. Hough, S. V. Antonyuk, S. S. Hasnain
Structural Evidence For A Copper-Bound Carbonate Intermediate In The Peroxidase And Dismutase Activities Of Superoxide Dismutase.
Plos One V. 7 44811 2012
[
close entry info
]
Hetero Components
(2, 4)
Info
All Hetero Components
1a: CARBONATE ION (CO3a)
1b: CARBONATE ION (CO3b)
1c: CARBONATE ION (CO3c)
1d: CARBONATE ION (CO3d)
1e: CARBONATE ION (CO3e)
1f: CARBONATE ION (CO3f)
1g: CARBONATE ION (CO3g)
1h: CARBONATE ION (CO3h)
1i: CARBONATE ION (CO3i)
1j: CARBONATE ION (CO3j)
2a: COPPER (II) ION (CUa)
2b: COPPER (II) ION (CUb)
2c: COPPER (II) ION (CUc)
2d: COPPER (II) ION (CUd)
2e: COPPER (II) ION (CUe)
2f: COPPER (II) ION (CUf)
2g: COPPER (II) ION (CUg)
2h: COPPER (II) ION (CUh)
2i: COPPER (II) ION (CUi)
2j: COPPER (II) ION (CUj)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
4g: ZINC ION (ZNg)
4h: ZINC ION (ZNh)
4i: ZINC ION (ZNi)
4j: ZINC ION (ZNj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CO3
2
Ligand/Ion
CARBONATE ION
2
CU
-1
Ligand/Ion
COPPER (II) ION
3
SO4
2
Ligand/Ion
SULFATE ION
4
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(8, 8)
Info
All Sites
1: BC4 (SOFTWARE)
2: BC5 (SOFTWARE)
3: BC6 (SOFTWARE)
4: DC1 (SOFTWARE)
5: DC2 (SOFTWARE)
6: DC3 (SOFTWARE)
7: DC6 (SOFTWARE)
8: DC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
BC4
SOFTWARE
HIS E:46 , HIS E:48 , HIS E:63 , HIS E:120 , CO3 E:156
BINDING SITE FOR RESIDUE CU E 154
2
BC5
SOFTWARE
HIS E:63 , HIS E:71 , HIS E:80 , ASP E:83
BINDING SITE FOR RESIDUE ZN E 155
3
BC6
SOFTWARE
HIS E:48 , HIS E:63 , HIS E:120 , THR E:137 , ARG E:143 , CU E:154 , HOH E:2108
BINDING SITE FOR RESIDUE CO3 E 156
4
DC1
SOFTWARE
HIS J:46 , HIS J:48 , HIS J:63 , HIS J:120 , HOH J:2041
BINDING SITE FOR RESIDUE CU J 154
5
DC2
SOFTWARE
HIS J:63 , HIS J:71 , HIS J:80 , ASP J:83
BINDING SITE FOR RESIDUE ZN J 155
6
DC3
SOFTWARE
GLY J:141 , ARG J:143 , HOH J:2041 , HOH J:2060 , HOH J:2115
BINDING SITE FOR RESIDUE CO3 J 156
7
DC6
SOFTWARE
LYS C:128 , HOH C:2128 , LYS I:128 , LYS J:128 , SO4 J:1155 , HOH J:2105 , HOH J:2106
BINDING SITE FOR RESIDUE SO4 J1154
8
DC7
SOFTWARE
LYS C:128 , LYS I:128 , HOH I:2154 , LEU J:126 , LYS J:128 , SO4 J:1154 , HOH J:2099 , HOH J:2120
BINDING SITE FOR RESIDUE SO4 J1155
[
close Site info
]
SAPs(SNPs)/Variants
(78, 156)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_013518 (A4S, chain E/J, )
02: VAR_007130 (A4T, chain E/J, )
03: VAR_007131 (A4V, chain E/J, )
04: VAR_008717 (C6F, chain E/J, )
05: VAR_007132 (V7E, chain E/J, )
06: VAR_013519 (L8Q, chain E/J, )
07: VAR_013520 (L8V, chain E/J, )
08: VAR_013521 (G12R, chain E/J, )
09: VAR_013522 (V14G, chain E/J, )
10: VAR_007133 (V14M, chain E/J, )
11: VAR_007134 (G16S, chain E/J, )
12: VAR_045876 (F20C, chain E/J, )
13: VAR_013523 (E21G, chain E/J, )
14: VAR_007135 (E21K, chain E/J, )
15: VAR_045877 (Q22L, chain E/J, )
16: VAR_007136 (G37R, chain E/J, )
17: VAR_013524 (L38R, chain E/J, )
18: VAR_007137 (L38V, chain E/J, )
19: VAR_007139 (G41D, chain E/J, )
20: VAR_007138 (G41S, chain E/J, )
21: VAR_007140 (H43R, chain E/J, )
22: VAR_013525 (F45C, chain E/J, )
23: VAR_007141 (H46R, chain E/J, )
24: VAR_007142 (H48Q, chain E/J, )
25: VAR_045878 (H48R, chain E/J, )
26: VAR_013526 (E49K, chain E/J, )
27: VAR_045879 (T54R, chain E/J, )
28: VAR_013527 (N65S, chain E/J, )
29: VAR_065560 (L67P, chain E/J, )
30: VAR_013528 (L67R, chain E/J, )
31: VAR_008718 (G72S, chain E/J, )
32: VAR_013529 (D76Y, chain E/J, )
33: VAR_016874 (H80A, chain E/J, )
34: VAR_013530 (L84F, chain E/J, )
35: VAR_007143 (L84V, chain E/J, )
36: VAR_007144 (G85R, chain E/J, )
37: VAR_013531 (N86S, chain E/J, )
38: VAR_045880 (V87A, chain E/J, )
39: VAR_045881 (A89T, chain E/J, )
40: VAR_013532 (A89V, chain E/J, )
41: VAR_007145 (D90A, chain E/J, )
42: VAR_013533 (D90V, chain E/J, )
43: VAR_007146 (G93A, chain E/J, )
44: VAR_007147 (G93C, chain E/J, )
45: VAR_007148 (G93D, chain E/J, )
46: VAR_007149 (G93R, chain E/J, )
47: VAR_008719 (G93V, chain E/J, )
48: VAR_065194 (A95G, chain E/J, )
49: VAR_045882 (V97M, chain E/J, )
50: VAR_007150 (E100G, chain E/J, )
51: VAR_013534 (E100K, chain E/J, )
52: VAR_007151 (D101G, chain E/J, )
53: VAR_007152 (D101N, chain E/J, )
54: VAR_008720 (I104F, chain E/J, )
55: VAR_013535 (S105L, chain E/J, )
56: VAR_007153 (L106V, chain E/J, )
57: VAR_013536 (G108V, chain E/J, )
58: VAR_013537 (I112M, chain E/J, )
59: VAR_007154 (I112T, chain E/J, )
60: VAR_007155 (I113T, chain E/J, )
61: VAR_013538 (G114A, chain E/J, )
62: VAR_007156 (R115G, chain E/J, )
63: VAR_045883 (V118L, chain E/J, )
64: VAR_045884 (D124G, chain E/J, )
65: VAR_008722 (D124V, chain E/J, )
66: VAR_007157 (D125H, chain E/J, )
67: VAR_013539 (L126S, chain E/J, )
68: VAR_007158 (S134N, chain E/J, )
69: VAR_007159 (N139K, chain E/J, )
70: VAR_007160 (L144F, chain E/J, )
71: VAR_008724 (L144S, chain E/J, )
72: VAR_008725 (A145T, chain E/J, )
73: VAR_013540 (C146R, chain E/J, )
74: VAR_045885 (G147R, chain E/J, )
75: VAR_007161 (V148G, chain E/J, )
76: VAR_007162 (V148I, chain E/J, )
77: VAR_007163 (I149T, chain E/J, )
78: VAR_007164 (I151T, chain E/J, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_013518
A
5
S
SODC_HUMAN
Disease (ALS1)
---
E/J
A
4
S
02
UniProt
VAR_007130
A
5
T
SODC_HUMAN
Disease (ALS1)
---
E/J
A
4
T
03
UniProt
VAR_007131
A
5
V
SODC_HUMAN
Disease (ALS1)
---
E/J
A
4
V
04
UniProt
VAR_008717
C
7
F
SODC_HUMAN
Disease (ALS1)
---
E/J
C
6
F
05
UniProt
VAR_007132
V
8
E
SODC_HUMAN
Disease (ALS1)
---
E/J
V
7
E
06
UniProt
VAR_013519
L
9
Q
SODC_HUMAN
Disease (ALS1)
---
E/J
L
8
Q
07
UniProt
VAR_013520
L
9
V
SODC_HUMAN
Disease (ALS1)
---
E/J
L
8
V
08
UniProt
VAR_013521
G
13
R
SODC_HUMAN
Disease (ALS1)
---
E/J
G
12
R
09
UniProt
VAR_013522
V
15
G
SODC_HUMAN
Disease (ALS1)
---
E/J
V
14
G
10
UniProt
VAR_007133
V
15
M
SODC_HUMAN
Disease (ALS1)
---
E/J
V
14
M
11
UniProt
VAR_007134
G
17
S
SODC_HUMAN
Disease (ALS1)
---
E/J
G
16
S
12
UniProt
VAR_045876
F
21
C
SODC_HUMAN
Disease (ALS1)
---
E/J
F
20
C
13
UniProt
VAR_013523
E
22
G
SODC_HUMAN
Disease (ALS1)
---
E/J
E
21
G
14
UniProt
VAR_007135
E
22
K
SODC_HUMAN
Disease (ALS1)
---
E/J
E
21
K
15
UniProt
VAR_045877
Q
23
L
SODC_HUMAN
Disease (ALS1)
---
E/J
Q
22
L
16
UniProt
VAR_007136
G
38
R
SODC_HUMAN
Disease (ALS1)
---
E/J
G
37
R
17
UniProt
VAR_013524
L
39
R
SODC_HUMAN
Disease (ALS1)
---
E/J
L
38
R
18
UniProt
VAR_007137
L
39
V
SODC_HUMAN
Disease (ALS1)
---
E/J
L
38
V
19
UniProt
VAR_007139
G
42
D
SODC_HUMAN
Disease (ALS1)
---
E/J
G
41
D
20
UniProt
VAR_007138
G
42
S
SODC_HUMAN
Disease (ALS1)
---
E/J
G
41
S
21
UniProt
VAR_007140
H
44
R
SODC_HUMAN
Disease (ALS1)
---
E/J
H
43
R
22
UniProt
VAR_013525
F
46
C
SODC_HUMAN
Disease (ALS1)
---
E/J
F
45
C
23
UniProt
VAR_007141
H
47
R
SODC_HUMAN
Disease (ALS1)
---
E/J
H
46
R
24
UniProt
VAR_007142
H
49
Q
SODC_HUMAN
Disease (ALS1)
---
E/J
H
48
Q
25
UniProt
VAR_045878
H
49
R
SODC_HUMAN
Disease (ALS1)
---
E/J
H
48
R
26
UniProt
VAR_013526
E
50
K
SODC_HUMAN
Disease (ALS1)
---
E/J
E
49
K
27
UniProt
VAR_045879
T
55
R
SODC_HUMAN
Disease (ALS1)
---
E/J
T
54
R
28
UniProt
VAR_013527
N
66
S
SODC_HUMAN
Disease (ALS1)
---
E/J
N
65
S
29
UniProt
VAR_065560
L
68
P
SODC_HUMAN
Disease (ALS1)
---
E/J
L
67
P
30
UniProt
VAR_013528
L
68
R
SODC_HUMAN
Disease (ALS1)
---
E/J
L
67
R
31
UniProt
VAR_008718
G
73
S
SODC_HUMAN
Disease (ALS1)
---
E/J
G
72
S
32
UniProt
VAR_013529
D
77
Y
SODC_HUMAN
Disease (ALS1)
---
E/J
D
76
Y
33
UniProt
VAR_016874
H
81
A
SODC_HUMAN
Disease (ALS1)
---
E/J
H
80
A
34
UniProt
VAR_013530
L
85
F
SODC_HUMAN
Disease (ALS1)
---
E/J
L
84
F
35
UniProt
VAR_007143
L
85
V
SODC_HUMAN
Disease (ALS1)
---
E/J
L
84
V
36
UniProt
VAR_007144
G
86
R
SODC_HUMAN
Disease (ALS1)
---
E/J
G
85
R
37
UniProt
VAR_013531
N
87
S
SODC_HUMAN
Disease (ALS1)
11556620
E/J
N
86
S
38
UniProt
VAR_045880
V
88
A
SODC_HUMAN
Disease (ALS1)
---
E/J
V
87
A
39
UniProt
VAR_045881
A
90
T
SODC_HUMAN
Disease (ALS1)
---
E/J
A
89
T
40
UniProt
VAR_013532
A
90
V
SODC_HUMAN
Disease (ALS1)
---
E/J
A
89
V
41
UniProt
VAR_007145
D
91
A
SODC_HUMAN
Disease (ALS1)
80265967
E/J
D
90
A
42
UniProt
VAR_013533
D
91
V
SODC_HUMAN
Disease (ALS1)
---
E/J
D
90
V
43
UniProt
VAR_007146
G
94
A
SODC_HUMAN
Disease (ALS1)
---
E/J
G
93
A
44
UniProt
VAR_007147
G
94
C
SODC_HUMAN
Disease (ALS1)
---
E/J
G
93
C
45
UniProt
VAR_007148
G
94
D
SODC_HUMAN
Disease (ALS1)
---
E/J
G
93
D
46
UniProt
VAR_007149
G
94
R
SODC_HUMAN
Disease (ALS1)
---
E/J
G
93
R
47
UniProt
VAR_008719
G
94
V
SODC_HUMAN
Disease (ALS1)
---
E/J
G
93
V
48
UniProt
VAR_065194
A
96
G
SODC_HUMAN
Disease (ALS1)
---
E/J
A
95
G
49
UniProt
VAR_045882
V
98
M
SODC_HUMAN
Disease (ALS1)
---
E/J
V
97
M
50
UniProt
VAR_007150
E
101
G
SODC_HUMAN
Disease (ALS1)
---
E/J
E
100
G
51
UniProt
VAR_013534
E
101
K
SODC_HUMAN
Disease (ALS1)
---
E/J
E
100
K
52
UniProt
VAR_007151
D
102
G
SODC_HUMAN
Disease (ALS1)
---
E/J
D
101
G
53
UniProt
VAR_007152
D
102
N
SODC_HUMAN
Disease (ALS1)
---
E/J
D
101
N
54
UniProt
VAR_008720
I
105
F
SODC_HUMAN
Disease (ALS1)
---
E/J
I
104
F
55
UniProt
VAR_013535
S
106
L
SODC_HUMAN
Disease (ALS1)
---
E/J
S
105
L
56
UniProt
VAR_007153
L
107
V
SODC_HUMAN
Disease (ALS1)
---
E/J
L
106
V
57
UniProt
VAR_013536
G
109
V
SODC_HUMAN
Disease (ALS1)
---
E/J
G
108
V
58
UniProt
VAR_013537
I
113
M
SODC_HUMAN
Disease (ALS1)
---
E/J
I
112
M
59
UniProt
VAR_007154
I
113
T
SODC_HUMAN
Disease (ALS1)
---
E/J
I
112
T
60
UniProt
VAR_007155
I
114
T
SODC_HUMAN
Disease (ALS1)
---
E/J
I
113
T
61
UniProt
VAR_013538
G
115
A
SODC_HUMAN
Disease (ALS1)
---
E/J
G
114
A
62
UniProt
VAR_007156
R
116
G
SODC_HUMAN
Disease (ALS1)
---
E/J
R
115
G
63
UniProt
VAR_045883
V
119
L
SODC_HUMAN
Disease (ALS1)
---
E/J
V
118
L
64
UniProt
VAR_045884
D
125
G
SODC_HUMAN
Disease (ALS1)
---
E/J
D
124
G
65
UniProt
VAR_008722
D
125
V
SODC_HUMAN
Disease (ALS1)
---
E/J
D
124
V
66
UniProt
VAR_007157
D
126
H
SODC_HUMAN
Disease (ALS1)
---
E/J
D
125
H
67
UniProt
VAR_013539
L
127
S
SODC_HUMAN
Disease (ALS1)
---
E/J
L
126
S
68
UniProt
VAR_007158
S
135
N
SODC_HUMAN
Disease (ALS1)
---
E/J
S
134
N
69
UniProt
VAR_007159
N
140
K
SODC_HUMAN
Disease (ALS1)
---
E/J
N
139
K
70
UniProt
VAR_007160
L
145
F
SODC_HUMAN
Disease (ALS1)
---
E/J
L
144
F
71
UniProt
VAR_008724
L
145
S
SODC_HUMAN
Disease (ALS1)
---
E/J
L
144
S
72
UniProt
VAR_008725
A
146
T
SODC_HUMAN
Disease (ALS1)
---
E/J
A
145
T
73
UniProt
VAR_013540
C
147
R
SODC_HUMAN
Disease (ALS1)
---
E/J
C
146
R
74
UniProt
VAR_045885
G
148
R
SODC_HUMAN
Disease (ALS1)
---
E/J
G
147
R
75
UniProt
VAR_007161
V
149
G
SODC_HUMAN
Disease (ALS1)
---
E/J
V
148
G
76
UniProt
VAR_007162
V
149
I
SODC_HUMAN
Disease (ALS1)
---
E/J
V
148
I
77
UniProt
VAR_007163
I
150
T
SODC_HUMAN
Disease (ALS1)
---
E/J
I
149
T
78
UniProt
VAR_007164
I
152
T
SODC_HUMAN
Disease (ALS1)
---
E/J
I
151
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: SOD_CU_ZN_1 (E:44-54,J:44-54)
2: SOD_CU_ZN_2 (E:138-149,J:138-149)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SOD_CU_ZN_1
PS00087
Copper/Zinc superoxide dismutase signature 1.
SODC_HUMAN
45-55
2
-
-
-
-
E:44-54
-
-
-
-
J:44-54
2
SOD_CU_ZN_2
PS00332
Copper/Zinc superoxide dismutase signature 2.
SODC_HUMAN
139-150
2
-
-
-
-
E:138-149
-
-
-
-
J:138-149
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1a: SCOP_d4b3ea_ (A:)
1b: SCOP_d4b3eb_ (B:)
1c: SCOP_d4b3ec_ (C:)
1d: SCOP_d4b3ed_ (D:)
1e: SCOP_d4b3ee_ (E:)
1f: SCOP_d4b3ef_ (F:)
1g: SCOP_d4b3eg_ (G:)
1h: SCOP_d4b3eh_ (H:)
1i: SCOP_d4b3ei_ (I:)
1j: SCOP_d4b3ej_ (J:)
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Fold
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Immunoglobulin-like beta-sandwich
(7299)
Superfamily
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Cu,Zn superoxide dismutase-like
(165)
Family
:
Cu,Zn superoxide dismutase-like
(158)
Protein domain
:
Cu,Zn superoxide dismutase, SOD
(134)
Human (Homo sapiens) [TaxId: 9606]
(69)
1a
d4b3ea_
A:
1b
d4b3eb_
B:
1c
d4b3ec_
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1d
d4b3ed_
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1e
d4b3ee_
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d4b3ef_
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d4b3eg_
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d4b3eh_
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d4b3ei_
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d4b3ej_
J:
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