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4B2D
Biol. Unit 1
Info
Asym.Unit (693 KB)
Biol.Unit 1 (682 KB)
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(1)
Title
:
HUMAN PKM2 WITH L-SERINE AND FBP BOUND.
Authors
:
B. Chaneton, P. Hillmann, L. Zheng, A. C. L. Martin, O. D. K. Maddocks, A. Chokkathukalam, J. E. Coyle, A. Jankevics, F. P. Holding, K. H. Vous C. Frezza, M. Oreilly, E. Gottlieb
Date
:
13 Jul 12 (Deposition) - 10 Oct 12 (Release) - 06 Feb 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Transferase, Tumour, Pkm2, Glycolysis
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
B. Chaneton, P. Hillmann, L. Zheng, A. C. L. Martin, O. D. K. Maddocks, A. Chokkathukalam, J. E. Coyle, A. Jankevics, F. P. Holding, K. H. Vousden, C. Frezza, M. Oreilly, E. Gottlieb
Serine Is A Natural Ligand And Allosteric Activator Of Pyruvate Kinase M2
Nature V. 491 458 2012
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: BETA-FRUCTOSE-1,6-DIPHOSPHATE (FBPa)
1b: BETA-FRUCTOSE-1,6-DIPHOSPHATE (FBPb)
1c: BETA-FRUCTOSE-1,6-DIPHOSPHATE (FBPc)
1d: BETA-FRUCTOSE-1,6-DIPHOSPHATE (FBPd)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
3a: SERINE (SERa)
3b: SERINE (SERb)
3c: SERINE (SERc)
3d: SERINE (SERd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FBP
4
Ligand/Ion
BETA-FRUCTOSE-1,6-DIPHOSPHATE
2
MG
-1
Ligand/Ion
MAGNESIUM ION
3
SER
4
Mod. Amino Acid
SERINE
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:431 , THR A:432 , LYS A:433 , SER A:434 , SER A:437 , TRP A:482 , ARG A:489 , GLY A:514 , ARG A:516 , PRO A:517 , GLY A:518 , SER A:519 , GLY A:520 , PHE A:521 , THR A:522 , HOH A:2336 , HOH A:2338 , HOH A:2344 , HOH A:2348 , HOH A:2351
BINDING SITE FOR RESIDUE FBP A 600
02
AC2
SOFTWARE
GLU A:223 , LEU B:431 , THR B:432 , LYS B:433 , SER B:434 , SER B:437 , TRP B:482 , ARG B:489 , GLY B:514 , ARG B:516 , PRO B:517 , GLY B:518 , SER B:519 , GLY B:520 , PHE B:521 , THR B:522 , HOH B:2209 , HOH B:2217 , HOH B:2218 , HOH B:2223 , HOH B:2241
BINDING SITE FOR RESIDUE FBP B 600
03
AC3
SOFTWARE
LEU C:431 , THR C:432 , LYS C:433 , SER C:434 , ARG C:436 , SER C:437 , TRP C:482 , ARG C:489 , GLY C:514 , ARG C:516 , PRO C:517 , GLY C:518 , SER C:519 , GLY C:520 , PHE C:521 , THR C:522 , HOH C:2281 , HOH C:2282 , HOH C:2286 , HOH C:2289
BINDING SITE FOR RESIDUE FBP C 600
04
AC4
SOFTWARE
THR D:432 , LYS D:433 , SER D:434 , SER D:437 , TRP D:482 , ARG D:489 , GLY D:514 , ARG D:516 , PRO D:517 , GLY D:518 , SER D:519 , GLY D:520 , PHE D:521 , THR D:522 , HOH D:2195 , HOH D:2204 , HOH D:2205 , HOH D:2248
BINDING SITE FOR RESIDUE FBP D 600
05
AC5
SOFTWARE
GLU A:272 , ASP A:296 , HOH A:2237
BINDING SITE FOR RESIDUE MG A 700
06
AC6
SOFTWARE
GLU C:272 , ASP C:296 , HOH C:2190
BINDING SITE FOR RESIDUE MG C 700
07
AC7
SOFTWARE
ARG D:43 , ASN D:44 , ASN D:70 , ARG D:106 , HIS D:464 , ILE D:469 , PHE D:470 , PRO D:471 , HOH D:2028 , HOH D:2029 , HOH D:2036 , HOH D:2057
BINDING SITE FOR RESIDUE SER D1532
08
AC8
SOFTWARE
ARG A:43 , ASN A:44 , ASN A:70 , ARG A:106 , HIS A:464 , ILE A:469 , PHE A:470 , PRO A:471 , HOH A:2038 , HOH A:2039 , HOH A:2045
BINDING SITE FOR RESIDUE SER A1532
09
AC9
SOFTWARE
ARG B:43 , ASN B:70 , ARG B:106 , HIS B:464 , ILE B:469 , PHE B:470 , PRO B:471 , HOH B:2029 , HOH B:2030 , HOH B:2032 , HOH B:2089
BINDING SITE FOR RESIDUE SER B1532
10
BC1
SOFTWARE
ARG C:43 , ASN C:44 , ASN C:70 , ARG C:106 , HIS C:464 , ILE C:469 , PHE C:470 , PRO C:471 , HOH C:2034 , HOH C:2035 , HOH C:2037 , HOH C:2057
BINDING SITE FOR RESIDUE SER C1532
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SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_033067 (G204V, chain A/B/C/D, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_033067
G
204
V
KPYM_HUMAN
Polymorphism
17853396
A/B/C/D
G
204
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: PYRUVATE_KINASE (A:265-277,B:265-277,C:265-277,D:26...)
;
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PYRUVATE_KINASE
PS00110
Pyruvate kinase active site signature.
KPYM_HUMAN
265-277
4
A:265-277
B:265-277
C:265-277
D:265-277
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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Sorry, no Info available
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Asymmetric Unit 1
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