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4B2C
Asym. Unit
Info
Asym.Unit (212 KB)
Biol.Unit 1 (101 KB)
Biol.Unit 2 (103 KB)
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(1)
Title
:
STRUCTURE OF THE FACTOR XA-LIKE TRYPSIN VARIANT TRIPLE-ALA (TPA) IN COMPLEX WITH EGLIN C
Authors
:
A. Menzel, P. Neumann, M. T. Stubbs
Date
:
13 Jul 12 (Deposition) - 01 Aug 12 (Release) - 23 Jul 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.43
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Menzel, P. Neumann, C. Schwieger, M. T. Stubbs
Thermodynamic Signatures In Macromolecular Interactions Involving Conformational Flexibility
Biol. Chem. V. 395 905 2014
[
close entry info
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Hetero Components
(4, 28)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
4f: GLYCEROL (GOLf)
4g: GLYCEROL (GOLg)
4h: GLYCEROL (GOLh)
4i: GLYCEROL (GOLi)
4j: GLYCEROL (GOLj)
4k: GLYCEROL (GOLk)
4l: GLYCEROL (GOLl)
4m: GLYCEROL (GOLm)
4n: GLYCEROL (GOLn)
4o: GLYCEROL (GOLo)
4p: GLYCEROL (GOLp)
4q: GLYCEROL (GOLq)
4r: GLYCEROL (GOLr)
4s: GLYCEROL (GOLs)
4t: GLYCEROL (GOLt)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
2
CL
2
Ligand/Ion
CHLORIDE ION
3
EDO
4
Ligand/Ion
1,2-ETHANEDIOL
4
GOL
20
Ligand/Ion
GLYCEROL
[
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Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:70 , ASN A:72 , VAL A:75 , GLU A:80 , HOH A:2069 , HOH A:2070
BINDING SITE FOR RESIDUE CA A1246
02
AC2
SOFTWARE
GLU C:70 , ASN C:72 , VAL C:75 , GLU C:80 , HOH C:2066 , HOH C:2067
BINDING SITE FOR RESIDUE CA C1246
03
AC3
SOFTWARE
HOH A:2035 , ASN B:50
BINDING SITE FOR RESIDUE CL B1071
04
AC4
SOFTWARE
VAL C:75 , VAL C:76 , HOH C:2074
BINDING SITE FOR RESIDUE CL C1247
05
AC5
SOFTWARE
TYR B:35 , LEU B:37 , ARG B:51 , ARG B:53 , HOH B:2054 , HOH B:2057 , HOH B:2073
BINDING SITE FOR RESIDUE GOL B1072
06
AC6
SOFTWARE
GLN A:135 , CYS A:136 , VAL A:200 , SER A:202 , GLY A:203
BINDING SITE FOR RESIDUE GOL A1247
07
AC7
SOFTWARE
EDO C:1256 , TYR D:35 , ARG D:51 , ARG D:53 , HOH D:2042 , HOH D:2046 , HOH D:2056
BINDING SITE FOR RESIDUE GOL D1071
08
AC8
SOFTWARE
THR A:144 , SER A:150 , PRO A:152 , GOL A:1249 , HOH A:2180 , GLU B:2 , GLY B:4
BINDING SITE FOR RESIDUE GOL A1248
09
AC9
SOFTWARE
ILE A:16 , GLY A:18 , GLY A:19 , LYS A:156 , GOL A:1248 , HOH A:2002
BINDING SITE FOR RESIDUE GOL A1249
10
BC1
SOFTWARE
HOH C:2170 , HOH C:2171 , GLU D:39 , GLY D:40 , HIS D:65 , HOH D:2057 , HOH D:2058
BINDING SITE FOR RESIDUE GOL D1072
11
BC2
SOFTWARE
HOH A:2171 , HOH A:2173 , GLU B:39 , GLY B:40 , PHE B:55 , HIS B:65 , HOH B:2075 , HOH B:2077
BINDING SITE FOR RESIDUE GOL B1073
12
BC3
SOFTWARE
GLN C:135 , VAL C:200 , CYS C:201 , SER C:202 , GLY C:203
BINDING SITE FOR RESIDUE GOL C1248
13
BC4
SOFTWARE
TYR A:59 , SER A:61 , GLY A:62 , ALA A:85 , HOH A:2058 , HOH A:2091
BINDING SITE FOR RESIDUE GOL A1250
14
BC5
SOFTWARE
GLU B:12 , TYR B:24 , HIS B:28 , TYR B:29
BINDING SITE FOR RESIDUE GOL B1074
15
BC6
SOFTWARE
ASP C:153 , GOL C:1251 , THR D:1 , PHE D:3 , GLY D:4 , SER D:5
BINDING SITE FOR RESIDUE GOL D1073
16
BC7
SOFTWARE
TYR C:20 , CYS C:22 , THR C:26
BINDING SITE FOR RESIDUE GOL C1249
17
BC8
SOFTWARE
ASP A:153 , THR B:1 , PHE B:3 , GLY B:4 , SER B:5
BINDING SITE FOR RESIDUE GOL B1075
18
BC9
SOFTWARE
HIS C:91 , ASN C:101 , ASN C:179 , ASN C:233 , TYR C:234 , HOH C:2152
BINDING SITE FOR RESIDUE GOL C1250
19
CC1
SOFTWARE
GLU B:6 , LEU B:7 , LYS B:8 , HOH B:2010 , HOH B:2078
BINDING SITE FOR RESIDUE GOL B1076
20
CC2
SOFTWARE
ASN C:74 , SER D:5 , GOL D:1073
BINDING SITE FOR RESIDUE GOL C1251
21
CC3
SOFTWARE
ASN A:34 , GLY A:38 , TYR A:39 , HIS A:40 , ARG A:66 , ILE A:73 , ASN A:74 , HOH A:2076
BINDING SITE FOR RESIDUE GOL A1251
22
CC4
SOFTWARE
ASN C:34 , GLY C:38 , TYR C:39 , HIS C:40 , ARG C:66 , ILE C:73 , ASN C:74 , HOH C:2075
BINDING SITE FOR RESIDUE GOL C1252
23
CC5
SOFTWARE
THR A:149 , TYR A:151 , HOH A:2166 , VAL B:69 , GLY B:70 , HOH B:2059 , HOH B:2060
BINDING SITE FOR RESIDUE GOL B1077
24
CC6
SOFTWARE
ILE C:16 , GLY C:18 , GLY C:19 , LYS C:156 , HOH C:2002 , GLU D:2
BINDING SITE FOR RESIDUE GOL C1253
25
CC7
SOFTWARE
ALA C:129 , PHE C:181 , HOH C:2128
BINDING SITE FOR RESIDUE EDO C1254
26
CC8
SOFTWARE
HOH B:2079
BINDING SITE FOR RESIDUE EDO B1078
27
CC9
SOFTWARE
GLN C:50 , TRP C:51 , ILE C:242 , ASN C:245
BINDING SITE FOR RESIDUE EDO C1255
28
DC1
SOFTWARE
SER C:96 , LYS C:159 , HOH C:2146 , GOL D:1071
BINDING SITE FOR RESIDUE EDO C1256
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(4, 8)
Info
All PROSITE Patterns/Profiles
1: POTATO_INHIBITOR (B:10-21,D:10-21)
2: TRYPSIN_DOM (A:16-243,C:16-243)
3: TRYPSIN_HIS (A:53-58,C:53-58)
4: TRYPSIN_SER (A:189-200,C:189-200)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
POTATO_INHIBITOR
PS00285
Potato inhibitor I family signature.
ICIC_HIRME
10-21
2
B:10-21
D:10-21
2
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
TRY1_BOVIN
24-244
2
A:16-243
C:16-243
3
TRYPSIN_HIS
PS00134
Serine proteases, trypsin family, histidine active site.
TRY1_BOVIN
59-64
2
A:53-58
C:53-58
4
TRYPSIN_SER
PS00135
Serine proteases, trypsin family, serine active site.
TRY1_BOVIN
194-205
2
A:189-200
C:189-200
[
close PROSITE info
]
Exons
(4, 8)
Info
All Exons
Exon 1.2 (A:16-63 (gaps) | C:16-63 (gaps))
Exon 1.3 (A:63-151 (gaps) | C:63-151 (gaps))
Exon 1.4 (A:151-194 | C:151-194)
Exon 1.5 (A:195-245 (gaps) | C:195-245 (gaps...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000033479
1
ENSBTAE00000401279
chr4:
109299627-109299547
81
TRY1_BOVIN
1-16
16
0
-
-
1.2
ENSBTAT00000033479
2
ENSBTAE00000397626
chr4:
109298170-109298011
160
TRY1_BOVIN
16-69
54
2
A:16-63 (gaps)
C:16-63 (gaps)
48
48
1.3
ENSBTAT00000033479
3
ENSBTAE00000409037
chr4:
109297593-109297340
254
TRY1_BOVIN
69-154
86
2
A:63-151 (gaps)
C:63-151 (gaps)
89
89
1.4
ENSBTAT00000033479
4
ENSBTAE00000386782
chr4:
109296654-109296518
137
TRY1_BOVIN
154-199
46
2
A:151-194
C:151-194
46
46
1.5
ENSBTAT00000033479
5
ENSBTAE00000422174
chr4:
109295990-109295749
242
TRY1_BOVIN
200-248
49
2
A:195-245 (gaps)
C:195-245 (gaps)
52
52
[
close EXON info
]
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d4b2ca_ (A:)
1b: SCOP_d4b2cc_ (C:)
2a: SCOP_d4b2cb_ (B:)
2b: SCOP_d4b2cd_ (D:)
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)
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(
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)
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Trypsin-like serine proteases
(1752)
Superfamily
:
Trypsin-like serine proteases
(1752)
Family
:
Eukaryotic proteases
(1343)
Protein domain
:
Trypsin(ogen)
(500)
Cow (Bos taurus) [TaxId: 9913]
(392)
1a
d4b2ca_
A:
1b
d4b2cc_
C:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
CI-2 family of serine protease inhibitors
(52)
Superfamily
:
CI-2 family of serine protease inhibitors
(52)
Family
:
CI-2 family of serine protease inhibitors
(50)
Protein domain
:
automated matches
(6)
Medicinal leech (Hirudo medicinalis) [TaxId: 6421]
(5)
2a
d4b2cb_
B:
2b
d4b2cd_
D:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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