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4AZM
Asym. Unit
Info
Asym.Unit (99 KB)
Biol.Unit 1 (93 KB)
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(1)
Title
:
HUMAN EPIDERMAL FATTY ACID-BINDING PROTEIN (FABP5) IN COMPLEX WITH THE INHIBITOR BMS-309413
Authors
:
B. Sanson, T. Wang, J. Sun, M. Kaczocha, I. Ojima, D. Deutsch, H. Li
Date
:
26 Jun 12 (Deposition) - 07 Aug 13 (Release) - 26 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Lipid Binding Protein, Lipid Carrier Protein, Endocannabinoid, Beta-Barrel, Beta-Clamshell, Domain Swapping
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Sanson, T. Wang, J. Sun, L. Wang, M. Kaczocha, I. Ojima, D. Deutsch, H. Li
Crystallographic Study Of Fabp5 As An Intracellular Endocannabinoid Transporter.
Acta Crystallogr. , Sect. D V. 70 290 2014
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
2a: ((2'-(5-ETHYL-3,4-DIPHENYL-1H-PYRA... (T4Ba)
2b: ((2'-(5-ETHYL-3,4-DIPHENYL-1H-PYRA... (T4Bb)
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No.
Name
Count
Type
Full Name
1
GOL
1
Ligand/Ion
GLYCEROL
2
T4B
2
Ligand/Ion
((2'-(5-ETHYL-3,4-DIPHENYL-1H-PYRAZOL-1-YL)-3-BIPHENYLYL)OXY)ACETIC ACID
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:19 , MET A:23 , LEU A:26 , GLY A:36 , PRO A:41 , THR A:56 , HOH A:2009 , GLN B:64 , ASP B:79 , ARG B:81 , ARG B:109 , VAL B:118 , CYS B:120 , ARG B:129 , TYR B:131
BINDING SITE FOR RESIDUE T4B B1136
2
AC2
SOFTWARE
GLN A:64 , ASP A:79 , ARG A:81 , ARG A:109 , VAL A:118 , CYS A:120 , ARG A:129 , TYR A:131 , PHE B:19 , TYR B:22 , MET B:23 , PRO B:41 , THR B:56
BINDING SITE FOR RESIDUE T4B A1135
3
AC3
SOFTWARE
GLY A:29 , ILE A:30 , LYS A:34 , ASP B:79
BINDING SITE FOR RESIDUE GOL A1136
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: FABP (A:9-26,B:9-26)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FABP
PS00214
Cytosolic fatty-acid binding proteins signature.
FABP5_HUMAN
9-26
2
A:9-26
B:9-26
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Exons
(4, 8)
Info
All Exons
Exon 1.1 (A:1-27 | B:2-27)
Exon 1.3c (A:27-84 | B:27-84)
Exon 1.4b (A:85-118 | B:85-118)
Exon 1.5 (A:119-134 | B:119-135)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.3c
3: Boundary 1.3c/1.4b
4: Boundary 1.4b/1.5
5: Boundary 1.5/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000297258
1
ENSE00001163337
chr8:
82192598-82192909
312
FABP5_HUMAN
1-27
27
2
A:1-27
B:2-27
27
26
1.3c
ENST00000297258
3c
ENSE00001800052
chr8:
82195601-82195773
173
FABP5_HUMAN
27-84
58
2
A:27-84
B:27-84
58
58
1.4b
ENST00000297258
4b
ENSE00001086607
chr8:
82196108-82196209
102
FABP5_HUMAN
85-118
34
2
A:85-118
B:85-118
34
34
1.5
ENST00000297258
5
ENSE00001524689
chr8:
82196749-82197012
264
FABP5_HUMAN
119-135
17
2
A:119-134
B:119-135
16
17
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4azma_ (A:)
1b: SCOP_d4azmb_ (B:)
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Class
:
All beta proteins
(24004)
Fold
:
Lipocalins
(514)
Superfamily
:
Lipocalins
(514)
Family
:
Fatty acid binding protein-like
(183)
Protein domain
:
automated matches
(26)
Human (Homo sapiens) [TaxId: 9606]
(15)
1a
d4azma_
A:
1b
d4azmb_
B:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (99 KB)
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