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4AYG
Biol. Unit 2
Info
Asym.Unit (716 KB)
Biol.Unit 1 (357 KB)
Biol.Unit 2 (358 KB)
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(1)
Title
:
LACTOBACILLUS REUTERI N-TERMINALLY TRUNCATED GLUCANSUCRASE GTF180 IN ORTHORHOMBIC APO-FORM
Authors
:
T. Pijning, A. Vujicic-Zagar, S. Kralj, L. Dijkhuizen, B. W. Dijkstra
Date
:
21 Jun 12 (Deposition) - 03 Jul 13 (Release) - 14 May 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Transferase, Glycosyltransferase, Glycosyl Hydrolase Family 70, Circularly Permuted Beta-Alpha Barrel
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Pijning, A. Vujicic-Zagar, S. Kralj, L. Dijkhuizen, B. W. Dijkstra
Flexibility Of Truncated And Full-Length Glucansucrase Gtf180 Enzymes From Lactobacillus Reuteri 180.
Febs J. V. 281 2159 2014
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close entry info
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Hetero Components
(4, 38)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
1b: ACETIC ACID (ACYb)
1c: ACETIC ACID (ACYc)
1d: ACETIC ACID (ACYd)
1e: ACETIC ACID (ACYe)
1f: ACETIC ACID (ACYf)
1g: ACETIC ACID (ACYg)
1h: ACETIC ACID (ACYh)
1i: ACETIC ACID (ACYi)
1j: ACETIC ACID (ACYj)
1k: ACETIC ACID (ACYk)
1l: ACETIC ACID (ACYl)
1m: ACETIC ACID (ACYm)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: GLYCEROL (GOLa)
3aa: GLYCEROL (GOLaa)
3ab: GLYCEROL (GOLab)
3ac: GLYCEROL (GOLac)
3ad: GLYCEROL (GOLad)
3ae: GLYCEROL (GOLae)
3af: GLYCEROL (GOLaf)
3ag: GLYCEROL (GOLag)
3ah: GLYCEROL (GOLah)
3ai: GLYCEROL (GOLai)
3aj: GLYCEROL (GOLaj)
3ak: GLYCEROL (GOLak)
3al: GLYCEROL (GOLal)
3am: GLYCEROL (GOLam)
3an: GLYCEROL (GOLan)
3ao: GLYCEROL (GOLao)
3ap: GLYCEROL (GOLap)
3aq: GLYCEROL (GOLaq)
3ar: GLYCEROL (GOLar)
3as: GLYCEROL (GOLas)
3at: GLYCEROL (GOLat)
3au: GLYCEROL (GOLau)
3av: GLYCEROL (GOLav)
3aw: GLYCEROL (GOLaw)
3ax: GLYCEROL (GOLax)
3ay: GLYCEROL (GOLay)
3az: GLYCEROL (GOLaz)
3b: GLYCEROL (GOLb)
3ba: GLYCEROL (GOLba)
3bb: GLYCEROL (GOLbb)
3bc: GLYCEROL (GOLbc)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
3k: GLYCEROL (GOLk)
3l: GLYCEROL (GOLl)
3m: GLYCEROL (GOLm)
3n: GLYCEROL (GOLn)
3o: GLYCEROL (GOLo)
3p: GLYCEROL (GOLp)
3q: GLYCEROL (GOLq)
3r: GLYCEROL (GOLr)
3s: GLYCEROL (GOLs)
3t: GLYCEROL (GOLt)
3u: GLYCEROL (GOLu)
3v: GLYCEROL (GOLv)
3w: GLYCEROL (GOLw)
3x: GLYCEROL (GOLx)
3y: GLYCEROL (GOLy)
3z: GLYCEROL (GOLz)
4a: ISOPROPYL ALCOHOL (IPAa)
4b: ISOPROPYL ALCOHOL (IPAb)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
5h: SULFATE ION (SO4h)
5i: SULFATE ION (SO4i)
5j: SULFATE ION (SO4j)
5k: SULFATE ION (SO4k)
5l: SULFATE ION (SO4l)
5m: SULFATE ION (SO4m)
5n: SULFATE ION (SO4n)
5o: SULFATE ION (SO4o)
5p: SULFATE ION (SO4p)
5q: SULFATE ION (SO4q)
5r: SULFATE ION (SO4r)
5s: SULFATE ION (SO4s)
5t: SULFATE ION (SO4t)
5u: SULFATE ION (SO4u)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
5
Ligand/Ion
ACETIC ACID
2
CA
-1
Ligand/Ion
CALCIUM ION
3
GOL
22
Ligand/Ion
GLYCEROL
4
IPA
1
Ligand/Ion
ISOPROPYL ALCOHOL
5
SO4
10
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(47, 47)
Info
All Sites
01: AC2 (SOFTWARE)
02: AC7 (SOFTWARE)
03: AC8 (SOFTWARE)
04: CC2 (SOFTWARE)
05: CC6 (SOFTWARE)
06: CC7 (SOFTWARE)
07: EC4 (SOFTWARE)
08: FC8 (SOFTWARE)
09: FC9 (SOFTWARE)
10: GC1 (SOFTWARE)
11: GC2 (SOFTWARE)
12: GC3 (SOFTWARE)
13: GC4 (SOFTWARE)
14: GC5 (SOFTWARE)
15: GC6 (SOFTWARE)
16: GC7 (SOFTWARE)
17: GC8 (SOFTWARE)
18: GC9 (SOFTWARE)
19: HC1 (SOFTWARE)
20: HC2 (SOFTWARE)
21: HC3 (SOFTWARE)
22: HC4 (SOFTWARE)
23: HC5 (SOFTWARE)
24: HC6 (SOFTWARE)
25: HC7 (SOFTWARE)
26: HC8 (SOFTWARE)
27: HC9 (SOFTWARE)
28: IC1 (SOFTWARE)
29: IC2 (SOFTWARE)
30: IC3 (SOFTWARE)
31: IC4 (SOFTWARE)
32: IC5 (SOFTWARE)
33: IC6 (SOFTWARE)
34: IC7 (SOFTWARE)
35: IC8 (SOFTWARE)
36: IC9 (SOFTWARE)
37: JC1 (SOFTWARE)
38: JC2 (SOFTWARE)
39: JC3 (SOFTWARE)
40: JC4 (SOFTWARE)
41: JC5 (SOFTWARE)
42: JC7 (SOFTWARE)
43: JC8 (SOFTWARE)
44: JC9 (SOFTWARE)
45: KC1 (SOFTWARE)
46: KC2 (SOFTWARE)
47: KC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC2
SOFTWARE
TRP A:1067 , ASP A:1068 , PRO A:1070 , ALA A:1071 , HOH A:3357 , HOH A:3376 , HOH A:4121 , HOH A:4123 , THR B:1325
BINDING SITE FOR RESIDUE GOL A2771
02
AC7
SOFTWARE
LYS A:1247 , GLY A:1291 , SER A:1293 , ASN B:1120 , HOH B:3406
BINDING SITE FOR RESIDUE GOL A2776
03
AC8
SOFTWARE
PHE A:879 , SER A:880 , ALA A:883 , GLU A:887 , PRO B:877 , SER B:878
BINDING SITE FOR RESIDUE GOL A2777
04
CC2
SOFTWARE
ALA A:1044 , GLU A:1566 , TYR A:1567 , GLN A:1569 , HOH A:3949 , ASP B:794 , HIS B:890 , HOH B:3064 , HOH B:3151
BINDING SITE FOR RESIDUE GOL A2789
05
CC6
SOFTWARE
HIS A:890 , LEU A:894 , HOH A:3136 , PRO B:873 , HOH B:3137
BINDING SITE FOR RESIDUE GOL A2793
06
CC7
SOFTWARE
ASN A:1344 , LEU A:1345 , ASP A:1346 , HOH A:3758 , ILE B:1109 , SER B:1244 , VAL B:1245 , HOH B:3381 , HOH B:3384 , HOH B:3403
BINDING SITE FOR RESIDUE GOL A2794
07
EC4
SOFTWARE
GLY A:1012 , ASN A:1013 , HOH A:3268 , TYR B:1640 , LYS B:1656 , HOH B:3934
BINDING SITE FOR RESIDUE SO4 A2809
08
FC8
SOFTWARE
ASN A:764 , ASN B:764
BINDING SITE FOR RESIDUE IPA A2822
09
FC9
SOFTWARE
GLU B:979 , ASP B:985 , ASN B:1029 , ASP B:1508 , HOH B:3242
BINDING SITE FOR RESIDUE CA B2772
10
GC1
SOFTWARE
PRO A:877 , SER A:878 , HOH A:3123 , PHE B:879 , SER B:880 , ALA B:883 , GLU B:887 , HOH B:3139 , HOH B:3142
BINDING SITE FOR RESIDUE GOL B2773
11
GC2
SOFTWARE
LEU B:982 , ASP B:1025 , ASP B:1458 , VAL B:1506 , GLN B:1509 , GOL B:2785 , HOH B:3281 , HOH B:3439
BINDING SITE FOR RESIDUE GOL B2774
12
GC3
SOFTWARE
SER B:958 , ASP B:959 , ASN B:990 , TYR B:1595 , HOH B:3220 , HOH B:3897 , HOH B:4020
BINDING SITE FOR RESIDUE GOL B2775
13
GC4
SOFTWARE
THR B:1530 , TRP B:1531 , GLU B:1532 , VAL B:1533 , SER B:1734 , GLY B:1736 , HOH B:3843 , HOH B:3999 , HOH B:4021
BINDING SITE FOR RESIDUE GOL B2776
14
GC5
SOFTWARE
SER B:1176 , THR B:1177 , ASN B:1178 , HOH B:4022
BINDING SITE FOR RESIDUE GOL B2777
15
GC6
SOFTWARE
ALA B:1330 , TYR B:1331 , LEU B:1338 , HIS B:1339 , HOH B:3700 , HOH B:4023
BINDING SITE FOR RESIDUE GOL B2778
16
GC7
SOFTWARE
TYR B:748 , PRO B:751 , ARG B:757 , LYS B:1713 , THR B:1718 , HOH B:4004
BINDING SITE FOR RESIDUE GOL B2779
17
GC8
SOFTWARE
ALA B:967 , THR B:968 , ASN B:969 , ILE B:970 , ASP B:971 , ASN B:974 , HOH B:4024
BINDING SITE FOR RESIDUE GOL B2780
18
GC9
SOFTWARE
GLN B:1103 , ALA B:1104 , HOH B:4025 , HOH B:4026
BINDING SITE FOR RESIDUE GOL B2781
19
HC1
SOFTWARE
TRP A:1067 , ARG A:1086 , ASP B:1326 , HOH B:3690 , HOH B:4027 , HOH B:4028
BINDING SITE FOR RESIDUE GOL B2782
20
HC2
SOFTWARE
LYS B:788 , THR B:790 , GLN B:858 , SER B:885 , ASN B:889 , GLN B:1631 , HOH B:3044 , HOH B:3049
BINDING SITE FOR RESIDUE GOL B2783
21
HC3
SOFTWARE
ARG B:1088 , ASN B:1138 , PRO B:1765 , HOH B:3360 , HOH B:3361 , HOH B:4014
BINDING SITE FOR RESIDUE GOL B2784
22
HC4
SOFTWARE
ARG B:1023 , ASP B:1025 , ALA B:1026 , ASN B:1029 , GLU B:1063 , TRP B:1065 , ASP B:1136 , GOL B:2774 , HOH B:3281 , HOH B:3287 , HOH B:3439
BINDING SITE FOR RESIDUE GOL B2785
23
HC5
SOFTWARE
VAL B:1586 , LYS B:1587 , LYS B:1589 , GLU B:1590 , LYS B:1594 , TYR B:1595 , HOH B:4030
BINDING SITE FOR RESIDUE GOL B2786
24
HC6
SOFTWARE
LYS B:928 , HIS B:1603 , HOH B:4031
BINDING SITE FOR RESIDUE GOL B2787
25
HC7
SOFTWARE
ASP B:959 , TRP B:960 , LEU B:962
BINDING SITE FOR RESIDUE GOL B2788
26
HC8
SOFTWARE
THR B:1581 , ILE B:1582 , ASP B:1583 , PRO B:1584 , SER B:1585 , HOH B:3889 , HOH B:4032
BINDING SITE FOR RESIDUE GOL B2789
27
HC9
SOFTWARE
GLY A:765 , ASN A:766 , ASP A:767 , TYR B:747 , TYR B:748 , ILE B:749 , HOH B:3004
BINDING SITE FOR RESIDUE GOL B2790
28
IC1
SOFTWARE
LYS B:1258 , THR B:1381 , ALA B:1382
BINDING SITE FOR RESIDUE GOL B2791
29
IC2
SOFTWARE
LYS B:783 , GLN B:785 , ASN B:1703 , THR B:1705 , ACY B:2806 , HOH B:3029 , HOH B:3030
BINDING SITE FOR RESIDUE GOL B2792
30
IC3
SOFTWARE
THR B:966 , ALA B:967 , THR B:968 , ASP B:1028 , GLY B:1066 , ASP B:1069 , HOH B:3336
BINDING SITE FOR RESIDUE GOL B2793
31
IC4
SOFTWARE
ASP A:1290 , GLY A:1291 , THR A:1341 , ASN A:1342 , HOH A:3698 , ASN B:1118 , HOH B:3404 , HOH B:4033
BINDING SITE FOR RESIDUE GOL B2794
32
IC5
SOFTWARE
SER B:1612 , TYR B:1618 , PRO B:1629 , SER B:1630 , ASN B:1637 , HOH B:3046 , HOH B:3910 , HOH B:3932
BINDING SITE FOR RESIDUE SO4 B2795
33
IC6
SOFTWARE
ASP B:1614 , LYS B:1616 , TYR B:1651 , ASP B:1653 , GLU B:1654 , HOH B:3916 , HOH B:3941
BINDING SITE FOR RESIDUE SO4 B2796
34
IC7
SOFTWARE
TYR B:806 , SER B:1633 , VAL B:1634 , GLN B:1635
BINDING SITE FOR RESIDUE SO4 B2797
35
IC8
SOFTWARE
LYS B:928 , TYR B:935 , HIS B:1603 , HOH B:3195 , HOH B:4008 , HOH B:4035
BINDING SITE FOR RESIDUE SO4 B2798
36
IC9
SOFTWARE
THR B:1530 , GLU B:1532 , LYS B:1537 , ASP B:1724 , HOH B:3850 , HOH B:4036
BINDING SITE FOR RESIDUE SO4 B2799
37
JC1
SOFTWARE
ARG B:1272 , HOH B:3669
BINDING SITE FOR RESIDUE SO4 B2800
38
JC2
SOFTWARE
GLU B:1419 , ARG B:1422 , PRO B:1478 , SER B:1483 , HOH B:3818 , HOH B:4040
BINDING SITE FOR RESIDUE SO4 B2801
39
JC3
SOFTWARE
THR B:968 , ASN B:974 , TYR B:975 , GLY B:976
BINDING SITE FOR RESIDUE SO4 B2802
40
JC4
SOFTWARE
ASN A:1335 , ASN B:1074 , ALA B:1124 , VAL B:1125 , ILE B:1126
BINDING SITE FOR RESIDUE SO4 B2803
41
JC5
SOFTWARE
ARG B:1221 , HOH B:3679
BINDING SITE FOR RESIDUE SO4 B2804
42
JC7
SOFTWARE
GLN B:745 , TYR B:747 , HOH B:3001
BINDING SITE FOR RESIDUE ACY B2805
43
JC8
SOFTWARE
ASP B:772 , LYS B:773 , ASP B:774 , LYS B:783 , GOL B:2792
BINDING SITE FOR RESIDUE ACY B2806
44
JC9
SOFTWARE
GLU B:1419 , HOH B:3762
BINDING SITE FOR RESIDUE ACY B2807
45
KC1
SOFTWARE
THR B:909 , ARG B:913 , HOH B:3120
BINDING SITE FOR RESIDUE ACY B2808
46
KC2
SOFTWARE
PHE B:1663 , ARG B:1708 , ASP B:1724 , HOH B:3981
BINDING SITE FOR RESIDUE ACY B2809
47
KC3
SOFTWARE
ARG B:1422 , HOH B:3534
BINDING SITE FOR RESIDUE IPA B2810
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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