PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
4AYG
Asym. Unit
Info
Asym.Unit (716 KB)
Biol.Unit 1 (357 KB)
Biol.Unit 2 (358 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
LACTOBACILLUS REUTERI N-TERMINALLY TRUNCATED GLUCANSUCRASE GTF180 IN ORTHORHOMBIC APO-FORM
Authors
:
T. Pijning, A. Vujicic-Zagar, S. Kralj, L. Dijkhuizen, B. W. Dijkstra
Date
:
21 Jun 12 (Deposition) - 03 Jul 13 (Release) - 14 May 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Transferase, Glycosyltransferase, Glycosyl Hydrolase Family 70, Circularly Permuted Beta-Alpha Barrel
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Pijning, A. Vujicic-Zagar, S. Kralj, L. Dijkhuizen, B. W. Dijkstra
Flexibility Of Truncated And Full-Length Glucansucrase Gtf180 Enzymes From Lactobacillus Reuteri 180.
Febs J. V. 281 2159 2014
[
close entry info
]
Hetero Components
(5, 93)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
1b: ACETIC ACID (ACYb)
1c: ACETIC ACID (ACYc)
1d: ACETIC ACID (ACYd)
1e: ACETIC ACID (ACYe)
1f: ACETIC ACID (ACYf)
1g: ACETIC ACID (ACYg)
1h: ACETIC ACID (ACYh)
1i: ACETIC ACID (ACYi)
1j: ACETIC ACID (ACYj)
1k: ACETIC ACID (ACYk)
1l: ACETIC ACID (ACYl)
1m: ACETIC ACID (ACYm)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: GLYCEROL (GOLa)
3aa: GLYCEROL (GOLaa)
3ab: GLYCEROL (GOLab)
3ac: GLYCEROL (GOLac)
3ad: GLYCEROL (GOLad)
3ae: GLYCEROL (GOLae)
3af: GLYCEROL (GOLaf)
3ag: GLYCEROL (GOLag)
3ah: GLYCEROL (GOLah)
3ai: GLYCEROL (GOLai)
3aj: GLYCEROL (GOLaj)
3ak: GLYCEROL (GOLak)
3al: GLYCEROL (GOLal)
3am: GLYCEROL (GOLam)
3an: GLYCEROL (GOLan)
3ao: GLYCEROL (GOLao)
3ap: GLYCEROL (GOLap)
3aq: GLYCEROL (GOLaq)
3ar: GLYCEROL (GOLar)
3as: GLYCEROL (GOLas)
3at: GLYCEROL (GOLat)
3au: GLYCEROL (GOLau)
3av: GLYCEROL (GOLav)
3aw: GLYCEROL (GOLaw)
3ax: GLYCEROL (GOLax)
3ay: GLYCEROL (GOLay)
3az: GLYCEROL (GOLaz)
3b: GLYCEROL (GOLb)
3ba: GLYCEROL (GOLba)
3bb: GLYCEROL (GOLbb)
3bc: GLYCEROL (GOLbc)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
3k: GLYCEROL (GOLk)
3l: GLYCEROL (GOLl)
3m: GLYCEROL (GOLm)
3n: GLYCEROL (GOLn)
3o: GLYCEROL (GOLo)
3p: GLYCEROL (GOLp)
3q: GLYCEROL (GOLq)
3r: GLYCEROL (GOLr)
3s: GLYCEROL (GOLs)
3t: GLYCEROL (GOLt)
3u: GLYCEROL (GOLu)
3v: GLYCEROL (GOLv)
3w: GLYCEROL (GOLw)
3x: GLYCEROL (GOLx)
3y: GLYCEROL (GOLy)
3z: GLYCEROL (GOLz)
4a: ISOPROPYL ALCOHOL (IPAa)
4b: ISOPROPYL ALCOHOL (IPAb)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
5h: SULFATE ION (SO4h)
5i: SULFATE ION (SO4i)
5j: SULFATE ION (SO4j)
5k: SULFATE ION (SO4k)
5l: SULFATE ION (SO4l)
5m: SULFATE ION (SO4m)
5n: SULFATE ION (SO4n)
5o: SULFATE ION (SO4o)
5p: SULFATE ION (SO4p)
5q: SULFATE ION (SO4q)
5r: SULFATE ION (SO4r)
5s: SULFATE ION (SO4s)
5t: SULFATE ION (SO4t)
5u: SULFATE ION (SO4u)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
13
Ligand/Ion
ACETIC ACID
2
CA
2
Ligand/Ion
CALCIUM ION
3
GOL
55
Ligand/Ion
GLYCEROL
4
IPA
2
Ligand/Ion
ISOPROPYL ALCOHOL
5
SO4
21
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(93, 93)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
61: GC7 (SOFTWARE)
62: GC8 (SOFTWARE)
63: GC9 (SOFTWARE)
64: HC1 (SOFTWARE)
65: HC2 (SOFTWARE)
66: HC3 (SOFTWARE)
67: HC4 (SOFTWARE)
68: HC5 (SOFTWARE)
69: HC6 (SOFTWARE)
70: HC7 (SOFTWARE)
71: HC8 (SOFTWARE)
72: HC9 (SOFTWARE)
73: IC1 (SOFTWARE)
74: IC2 (SOFTWARE)
75: IC3 (SOFTWARE)
76: IC4 (SOFTWARE)
77: IC5 (SOFTWARE)
78: IC6 (SOFTWARE)
79: IC7 (SOFTWARE)
80: IC8 (SOFTWARE)
81: IC9 (SOFTWARE)
82: JC1 (SOFTWARE)
83: JC2 (SOFTWARE)
84: JC3 (SOFTWARE)
85: JC4 (SOFTWARE)
86: JC5 (SOFTWARE)
87: JC6 (SOFTWARE)
88: JC7 (SOFTWARE)
89: JC8 (SOFTWARE)
90: JC9 (SOFTWARE)
91: KC1 (SOFTWARE)
92: KC2 (SOFTWARE)
93: KC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:979 , ASP A:985 , ASN A:1029 , ASP A:1508 , HOH A:3241
BINDING SITE FOR RESIDUE CA A2770
02
AC2
SOFTWARE
TRP A:1067 , ASP A:1068 , PRO A:1070 , ALA A:1071 , HOH A:3357 , HOH A:3376 , HOH A:4121 , HOH A:4123 , THR B:1325
BINDING SITE FOR RESIDUE GOL A2771
03
AC3
SOFTWARE
SER A:958 , ASP A:959 , ASN A:990 , TYR A:1595 , ACY A:2818 , HOH A:3216 , HOH A:3982 , HOH A:4124
BINDING SITE FOR RESIDUE GOL A2772
04
AC4
SOFTWARE
LEU A:982 , ASP A:1025 , ASP A:1458 , VAL A:1506 , GLN A:1509 , GOL A:2791 , HOH A:3286 , HOH A:3468 , HOH A:3469
BINDING SITE FOR RESIDUE GOL A2773
05
AC5
SOFTWARE
TYR A:868 , GLY A:869 , ASN A:870 , ARG A:902 , THR A:1581 , ILE A:1582 , PRO A:1584 , HOH A:3144 , HOH A:3952 , HOH A:3966 , HOH A:3967
BINDING SITE FOR RESIDUE GOL A2774
06
AC6
SOFTWARE
THR A:1284 , GLU A:1315 , ARG A:1354 , GLY A:1355 , TYR A:1356 , ALA A:1357
BINDING SITE FOR RESIDUE GOL A2775
07
AC7
SOFTWARE
LYS A:1247 , GLY A:1291 , SER A:1293 , ASN B:1120 , HOH B:3406
BINDING SITE FOR RESIDUE GOL A2776
08
AC8
SOFTWARE
PHE A:879 , SER A:880 , ALA A:883 , GLU A:887 , PRO B:877 , SER B:878
BINDING SITE FOR RESIDUE GOL A2777
09
AC9
SOFTWARE
THR A:1530 , TRP A:1531 , GLU A:1532 , VAL A:1533 , SER A:1734 , GLY A:1736 , HOH A:3907 , HOH A:4090 , HOH A:4125
BINDING SITE FOR RESIDUE GOL A2778
10
BC1
SOFTWARE
ASP A:959 , TRP A:960 , LEU A:962 , HOH A:3215 , HOH A:3217
BINDING SITE FOR RESIDUE GOL A2779
11
BC2
SOFTWARE
SER A:1176 , THR A:1177 , ASN A:1178 , HOH A:3543 , HOH A:3545
BINDING SITE FOR RESIDUE GOL A2780
12
BC3
SOFTWARE
VAL A:1586 , LYS A:1587 , LYS A:1589 , GLU A:1590 , LYS A:1594 , TYR A:1595 , HOH A:4126
BINDING SITE FOR RESIDUE GOL A2781
13
BC4
SOFTWARE
MET A:844 , THR A:909 , ASP A:910 , ARG A:913 , HOH A:3109 , HOH A:3110 , HOH A:4127
BINDING SITE FOR RESIDUE GOL A2782
14
BC5
SOFTWARE
LYS A:928 , HIS A:1603 , SO4 A:2806 , HOH A:4128
BINDING SITE FOR RESIDUE GOL A2783
15
BC6
SOFTWARE
THR A:1417 , THR A:1418 , ARG A:1422 , HOH A:3814 , HOH A:4130
BINDING SITE FOR RESIDUE GOL A2784
16
BC7
SOFTWARE
LYS A:1057 , HIS A:1495 , LEU A:1499 , HOH A:3281 , HOH A:3282 , HOH A:3895
BINDING SITE FOR RESIDUE GOL A2785
17
BC8
SOFTWARE
TYR A:770 , ASP A:772 , LYS A:773 , ASP A:774
BINDING SITE FOR RESIDUE GOL A2786
18
BC9
SOFTWARE
ASN A:1074 , ASN A:1123 , VAL A:1125 , HOH A:3364 , HOH A:3365 , HOH A:4132
BINDING SITE FOR RESIDUE GOL A2787
19
CC1
SOFTWARE
THR A:1381 , ALA A:1382 , PRO A:1383 , ALA A:1399 , SER A:1402 , THR A:1440 , HOH A:3337 , HOH A:3788
BINDING SITE FOR RESIDUE GOL A2788
20
CC2
SOFTWARE
ALA A:1044 , GLU A:1566 , TYR A:1567 , GLN A:1569 , HOH A:3949 , ASP B:794 , HIS B:890 , HOH B:3064 , HOH B:3151
BINDING SITE FOR RESIDUE GOL A2789
21
CC3
SOFTWARE
ASN A:898 , ARG A:902 , GLU A:905 , SER A:1572 , VAL A:1574 , HOH A:3140
BINDING SITE FOR RESIDUE GOL A2790
22
CC4
SOFTWARE
ARG A:1023 , ASP A:1025 , ALA A:1026 , GLU A:1063 , TRP A:1065 , ASP A:1136 , GOL A:2773 , HOH A:3294
BINDING SITE FOR RESIDUE GOL A2791
23
CC5
SOFTWARE
THR A:966 , ALA A:967 , THR A:968 , GLY A:977 , ASP A:1028 , ASP A:1069 , HOH A:3291 , HOH A:3354
BINDING SITE FOR RESIDUE GOL A2792
24
CC6
SOFTWARE
HIS A:890 , LEU A:894 , HOH A:3136 , PRO B:873 , HOH B:3137
BINDING SITE FOR RESIDUE GOL A2793
25
CC7
SOFTWARE
ASN A:1344 , LEU A:1345 , ASP A:1346 , HOH A:3758 , ILE B:1109 , SER B:1244 , VAL B:1245 , HOH B:3381 , HOH B:3384 , HOH B:3403
BINDING SITE FOR RESIDUE GOL A2794
26
CC8
SOFTWARE
GLN A:763 , GLY A:765 , ASN A:766 , ASP A:767 , TRP A:768 , ASN A:1683 , GLN A:1684 , GOL A:2797
BINDING SITE FOR RESIDUE GOL A2795
27
CC9
SOFTWARE
ASN A:815 , GLU A:1517 , ILE A:1546 , HOH A:3072 , HOH A:3980
BINDING SITE FOR RESIDUE GOL A2796
28
DC1
SOFTWARE
GLN A:763 , GLY A:765 , ASP A:1715 , GOL A:2795
BINDING SITE FOR RESIDUE GOL A2797
29
DC2
SOFTWARE
THR A:1011 , ASP A:1484 , TYR A:1551 , HOH A:3937
BINDING SITE FOR RESIDUE GOL A2798
30
DC3
SOFTWARE
HIS A:1218 , LYS A:1219 , HOH A:3588
BINDING SITE FOR RESIDUE GOL A2799
31
DC4
SOFTWARE
ALA A:967 , THR A:968 , ASN A:969 , ILE A:970 , ASP A:971 , ASN A:974 , HOH A:4135 , HOH A:4136
BINDING SITE FOR RESIDUE GOL A2800
32
DC5
SOFTWARE
TYR A:748 , ARG A:757 , LYS A:1713 , THR A:1718 , HOH A:4137
BINDING SITE FOR RESIDUE GOL A2801
33
DC6
SOFTWARE
LYS A:1258 , THR A:1381 , ALA A:1382 , HOH A:3682 , HOH A:3789 , HOH A:4138
BINDING SITE FOR RESIDUE GOL A2802
34
DC7
SOFTWARE
LYS A:788 , GLY A:789 , THR A:790 , TRP A:852 , ASN A:854 , GLN A:858 , ASN A:889 , GLN A:1631 , HOH A:3116
BINDING SITE FOR RESIDUE GOL A2803
35
DC8
SOFTWARE
LYS A:788 , SER A:1612 , TYR A:1618 , PRO A:1629 , SER A:1630 , ASN A:1637 , HOH A:3113 , HOH A:4022
BINDING SITE FOR RESIDUE SO4 A2804
36
DC9
SOFTWARE
ASP A:1614 , LYS A:1616 , TYR A:1651 , ASP A:1653 , GLU A:1654 , HOH A:4001 , HOH A:4026 , HOH A:4034 , HOH A:4139
BINDING SITE FOR RESIDUE SO4 A2805
37
EC1
SOFTWARE
LYS A:928 , TYR A:935 , HIS A:1603 , GOL A:2783 , HOH A:3190 , HOH A:4140
BINDING SITE FOR RESIDUE SO4 A2806
38
EC2
SOFTWARE
THR A:1530 , GLU A:1532 , LYS A:1537 , ASP A:1724 , HOH A:3913 , HOH A:4082 , HOH A:4141
BINDING SITE FOR RESIDUE SO4 A2807
39
EC3
SOFTWARE
THR A:968 , ASN A:974 , TYR A:975 , GLY A:976
BINDING SITE FOR RESIDUE SO4 A2808
40
EC4
SOFTWARE
GLY A:1012 , ASN A:1013 , HOH A:3268 , TYR B:1640 , LYS B:1656 , HOH B:3934
BINDING SITE FOR RESIDUE SO4 A2809
41
EC5
SOFTWARE
TYR A:806 , GLU A:1217 , HIS A:1218 , SER A:1633 , VAL A:1634 , GLN A:1635 , HOH A:3589 , HOH A:4142
BINDING SITE FOR RESIDUE SO4 A2810
42
EC6
SOFTWARE
HIS A:1297 , HOH A:3632 , HOH A:3633 , HOH A:3646
BINDING SITE FOR RESIDUE SO4 A2811
43
EC7
SOFTWARE
ASN A:1344 , GLY A:1347 , HOH A:3759 , HOH A:3760 , HOH A:3763
BINDING SITE FOR RESIDUE SO4 A2812
44
EC8
SOFTWARE
LYS A:1516 , ARG A:1604 , HOH A:3080 , HOH A:3923 , HOH A:3986
BINDING SITE FOR RESIDUE SO4 A2813
45
EC9
SOFTWARE
ARG A:1272 , HOH A:3715
BINDING SITE FOR RESIDUE ACY A2814
46
FC1
SOFTWARE
MET A:1092 , ACY A:2820 , HOH A:4144
BINDING SITE FOR RESIDUE ACY A2815
47
FC2
SOFTWARE
ARG A:1221 , HOH A:3725 , HOH A:4145
BINDING SITE FOR RESIDUE ACY A2816
48
FC3
SOFTWARE
GLY A:744 , GLN A:745 , TYR A:747
BINDING SITE FOR RESIDUE ACY A2817
49
FC4
SOFTWARE
LYS A:1594 , GOL A:2772 , HOH A:3210 , HOH A:4146
BINDING SITE FOR RESIDUE ACY A2818
50
FC5
SOFTWARE
GLU A:1419 , ARG A:1422 , HOH A:3879 , HOH A:4147
BINDING SITE FOR RESIDUE ACY A2819
51
FC6
SOFTWARE
ARG A:1088 , ASN A:1089 , ASN A:1138 , PRO A:1765 , ACY A:2815 , HOH A:3467
BINDING SITE FOR RESIDUE ACY A2820
52
FC7
SOFTWARE
GLN A:1103 , ALA A:1104
BINDING SITE FOR RESIDUE ACY A2821
53
FC8
SOFTWARE
ASN A:764 , ASN B:764
BINDING SITE FOR RESIDUE IPA A2822
54
FC9
SOFTWARE
GLU B:979 , ASP B:985 , ASN B:1029 , ASP B:1508 , HOH B:3242
BINDING SITE FOR RESIDUE CA B2772
55
GC1
SOFTWARE
PRO A:877 , SER A:878 , HOH A:3123 , PHE B:879 , SER B:880 , ALA B:883 , GLU B:887 , HOH B:3139 , HOH B:3142
BINDING SITE FOR RESIDUE GOL B2773
56
GC2
SOFTWARE
LEU B:982 , ASP B:1025 , ASP B:1458 , VAL B:1506 , GLN B:1509 , GOL B:2785 , HOH B:3281 , HOH B:3439
BINDING SITE FOR RESIDUE GOL B2774
57
GC3
SOFTWARE
SER B:958 , ASP B:959 , ASN B:990 , TYR B:1595 , HOH B:3220 , HOH B:3897 , HOH B:4020
BINDING SITE FOR RESIDUE GOL B2775
58
GC4
SOFTWARE
THR B:1530 , TRP B:1531 , GLU B:1532 , VAL B:1533 , SER B:1734 , GLY B:1736 , HOH B:3843 , HOH B:3999 , HOH B:4021
BINDING SITE FOR RESIDUE GOL B2776
59
GC5
SOFTWARE
SER B:1176 , THR B:1177 , ASN B:1178 , HOH B:4022
BINDING SITE FOR RESIDUE GOL B2777
60
GC6
SOFTWARE
ALA B:1330 , TYR B:1331 , LEU B:1338 , HIS B:1339 , HOH B:3700 , HOH B:4023
BINDING SITE FOR RESIDUE GOL B2778
61
GC7
SOFTWARE
TYR B:748 , PRO B:751 , ARG B:757 , LYS B:1713 , THR B:1718 , HOH B:4004
BINDING SITE FOR RESIDUE GOL B2779
62
GC8
SOFTWARE
ALA B:967 , THR B:968 , ASN B:969 , ILE B:970 , ASP B:971 , ASN B:974 , HOH B:4024
BINDING SITE FOR RESIDUE GOL B2780
63
GC9
SOFTWARE
GLN B:1103 , ALA B:1104 , HOH B:4025 , HOH B:4026
BINDING SITE FOR RESIDUE GOL B2781
64
HC1
SOFTWARE
TRP A:1067 , ARG A:1086 , ASP B:1326 , HOH B:3690 , HOH B:4027 , HOH B:4028
BINDING SITE FOR RESIDUE GOL B2782
65
HC2
SOFTWARE
LYS B:788 , THR B:790 , GLN B:858 , SER B:885 , ASN B:889 , GLN B:1631 , HOH B:3044 , HOH B:3049
BINDING SITE FOR RESIDUE GOL B2783
66
HC3
SOFTWARE
ARG B:1088 , ASN B:1138 , PRO B:1765 , HOH B:3360 , HOH B:3361 , HOH B:4014
BINDING SITE FOR RESIDUE GOL B2784
67
HC4
SOFTWARE
ARG B:1023 , ASP B:1025 , ALA B:1026 , ASN B:1029 , GLU B:1063 , TRP B:1065 , ASP B:1136 , GOL B:2774 , HOH B:3281 , HOH B:3287 , HOH B:3439
BINDING SITE FOR RESIDUE GOL B2785
68
HC5
SOFTWARE
VAL B:1586 , LYS B:1587 , LYS B:1589 , GLU B:1590 , LYS B:1594 , TYR B:1595 , HOH B:4030
BINDING SITE FOR RESIDUE GOL B2786
69
HC6
SOFTWARE
LYS B:928 , HIS B:1603 , HOH B:4031
BINDING SITE FOR RESIDUE GOL B2787
70
HC7
SOFTWARE
ASP B:959 , TRP B:960 , LEU B:962
BINDING SITE FOR RESIDUE GOL B2788
71
HC8
SOFTWARE
THR B:1581 , ILE B:1582 , ASP B:1583 , PRO B:1584 , SER B:1585 , HOH B:3889 , HOH B:4032
BINDING SITE FOR RESIDUE GOL B2789
72
HC9
SOFTWARE
GLY A:765 , ASN A:766 , ASP A:767 , TYR B:747 , TYR B:748 , ILE B:749 , HOH B:3004
BINDING SITE FOR RESIDUE GOL B2790
73
IC1
SOFTWARE
LYS B:1258 , THR B:1381 , ALA B:1382
BINDING SITE FOR RESIDUE GOL B2791
74
IC2
SOFTWARE
LYS B:783 , GLN B:785 , ASN B:1703 , THR B:1705 , ACY B:2806 , HOH B:3029 , HOH B:3030
BINDING SITE FOR RESIDUE GOL B2792
75
IC3
SOFTWARE
THR B:966 , ALA B:967 , THR B:968 , ASP B:1028 , GLY B:1066 , ASP B:1069 , HOH B:3336
BINDING SITE FOR RESIDUE GOL B2793
76
IC4
SOFTWARE
ASP A:1290 , GLY A:1291 , THR A:1341 , ASN A:1342 , HOH A:3698 , ASN B:1118 , HOH B:3404 , HOH B:4033
BINDING SITE FOR RESIDUE GOL B2794
77
IC5
SOFTWARE
SER B:1612 , TYR B:1618 , PRO B:1629 , SER B:1630 , ASN B:1637 , HOH B:3046 , HOH B:3910 , HOH B:3932
BINDING SITE FOR RESIDUE SO4 B2795
78
IC6
SOFTWARE
ASP B:1614 , LYS B:1616 , TYR B:1651 , ASP B:1653 , GLU B:1654 , HOH B:3916 , HOH B:3941
BINDING SITE FOR RESIDUE SO4 B2796
79
IC7
SOFTWARE
TYR B:806 , SER B:1633 , VAL B:1634 , GLN B:1635
BINDING SITE FOR RESIDUE SO4 B2797
80
IC8
SOFTWARE
LYS B:928 , TYR B:935 , HIS B:1603 , HOH B:3195 , HOH B:4008 , HOH B:4035
BINDING SITE FOR RESIDUE SO4 B2798
81
IC9
SOFTWARE
THR B:1530 , GLU B:1532 , LYS B:1537 , ASP B:1724 , HOH B:3850 , HOH B:4036
BINDING SITE FOR RESIDUE SO4 B2799
82
JC1
SOFTWARE
ARG B:1272 , HOH B:3669
BINDING SITE FOR RESIDUE SO4 B2800
83
JC2
SOFTWARE
GLU B:1419 , ARG B:1422 , PRO B:1478 , SER B:1483 , HOH B:3818 , HOH B:4040
BINDING SITE FOR RESIDUE SO4 B2801
84
JC3
SOFTWARE
THR B:968 , ASN B:974 , TYR B:975 , GLY B:976
BINDING SITE FOR RESIDUE SO4 B2802
85
JC4
SOFTWARE
ASN A:1335 , ASN B:1074 , ALA B:1124 , VAL B:1125 , ILE B:1126
BINDING SITE FOR RESIDUE SO4 B2803
86
JC5
SOFTWARE
ARG B:1221 , HOH B:3679
BINDING SITE FOR RESIDUE SO4 B2804
87
JC6
SOFTWARE
PHE A:1663 , TYR A:1698 , ARG A:1708 , ASP A:1724 , ARG A:1726 , HOH A:4071
BINDING SITE FOR RESIDUE SO4 A2823
88
JC7
SOFTWARE
GLN B:745 , TYR B:747 , HOH B:3001
BINDING SITE FOR RESIDUE ACY B2805
89
JC8
SOFTWARE
ASP B:772 , LYS B:773 , ASP B:774 , LYS B:783 , GOL B:2792
BINDING SITE FOR RESIDUE ACY B2806
90
JC9
SOFTWARE
GLU B:1419 , HOH B:3762
BINDING SITE FOR RESIDUE ACY B2807
91
KC1
SOFTWARE
THR B:909 , ARG B:913 , HOH B:3120
BINDING SITE FOR RESIDUE ACY B2808
92
KC2
SOFTWARE
PHE B:1663 , ARG B:1708 , ASP B:1724 , HOH B:3981
BINDING SITE FOR RESIDUE ACY B2809
93
KC3
SOFTWARE
ARG B:1422 , HOH B:3534
BINDING SITE FOR RESIDUE IPA B2810
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (716 KB)
Header - Asym.Unit
Biol.Unit 1 (357 KB)
Header - Biol.Unit 1
Biol.Unit 2 (358 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4AYG
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
