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4AY8
Asym. Unit
Info
Asym.Unit (118 KB)
Biol.Unit 1 (58 KB)
Biol.Unit 2 (57 KB)
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(1)
Title
:
SEMET-DERIVATIVE OF A METHYLTRANSFERASE FROM M. MAZEI
Authors
:
A. Hoeppner, F. Thomas, A. Rueppel, R. Hensel, W. Blankenfeldt, P. Baye A. Faust
Date
:
18 Jun 12 (Deposition) - 31 Oct 12 (Release) - 05 Nov 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Hoeppner, F. Thomas, A. Rueppel, R. Hensel, W. Blankenfeldt, P. Bayer, A. Faust
Structure Of The Corrinoid:Coenzyme M Methyltransferase Mtaa From Methanosarcina Mazei
Acta Crystallogr. , Sect. D V. 68 1549 2012
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Hetero Components
(6, 31)
Info
All Hetero Components
1a: 1-THIOETHANESULFONIC ACID (COMa)
1b: 1-THIOETHANESULFONIC ACID (COMb)
2a: 3-SULFINOALANINE (CSDa)
2b: 3-SULFINOALANINE (CSDb)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
4a: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDa)
5a: SELENOMETHIONINE (MSEa)
5b: SELENOMETHIONINE (MSEb)
5c: SELENOMETHIONINE (MSEc)
5d: SELENOMETHIONINE (MSEd)
5e: SELENOMETHIONINE (MSEe)
5f: SELENOMETHIONINE (MSEf)
5g: SELENOMETHIONINE (MSEg)
5h: SELENOMETHIONINE (MSEh)
5i: SELENOMETHIONINE (MSEi)
5j: SELENOMETHIONINE (MSEj)
5k: SELENOMETHIONINE (MSEk)
5l: SELENOMETHIONINE (MSEl)
5m: SELENOMETHIONINE (MSEm)
5n: SELENOMETHIONINE (MSEn)
5o: SELENOMETHIONINE (MSEo)
5p: SELENOMETHIONINE (MSEp)
5q: SELENOMETHIONINE (MSEq)
5r: SELENOMETHIONINE (MSEr)
5s: SELENOMETHIONINE (MSEs)
5t: SELENOMETHIONINE (MSEt)
5u: SELENOMETHIONINE (MSEu)
5v: SELENOMETHIONINE (MSEv)
6a: ZINC ION (ZNa)
6b: ZINC ION (ZNb)
View:
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No.
Name
Count
Type
Full Name
1
COM
2
Ligand/Ion
1-THIOETHANESULFONIC ACID
2
CSD
2
Mod. Amino Acid
3-SULFINOALANINE
3
GOL
2
Ligand/Ion
GLYCEROL
4
MRD
1
Ligand/Ion
(4R)-2-METHYLPENTANE-2,4-DIOL
5
MSE
22
Mod. Amino Acid
SELENOMETHIONINE
6
ZN
2
Ligand/Ion
ZINC ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:31 , GLN A:32 , ARG A:73 , LEU A:78 , GLN A:97 , HIS A:240 , CYS A:242 , CYS A:319 , GLY A:320 , ZN A:600 , HOH A:2052
BINDING SITE FOR RESIDUE COM A 500
2
AC2
SOFTWARE
HIS A:240 , CYS A:242 , CYS A:319 , COM A:500
BINDING SITE FOR RESIDUE ZN A 600
3
AC3
SOFTWARE
LYS A:170 , LYS A:171 , THR A:172 , ASP A:173
BINDING SITE FOR RESIDUE MRD A 800
4
AC4
SOFTWARE
THR B:31 , GLN B:32 , ARG B:73 , LEU B:78 , GLN B:97 , CYS B:242 , CYS B:319 , GLY B:320 , ZN B:600 , HOH B:2051
BINDING SITE FOR RESIDUE COM B 500
5
AC5
SOFTWARE
HIS B:240 , CYS B:242 , CYS B:319 , COM B:500
BINDING SITE FOR RESIDUE ZN B 600
6
AC6
SOFTWARE
LYS B:170 , LYS B:171 , THR B:172 , ASP B:173
BINDING SITE FOR RESIDUE GOL B 700
7
AC7
SOFTWARE
PHE B:340
BINDING SITE FOR RESIDUE GOL B 701
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4ay8a_ (A:)
1b: SCOP_d4ay8b_ (B:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
UROD/MetE-like
(30)
Family
:
automated matches
(4)
Protein domain
:
automated matches
(4)
Methanosarcina mazei [TaxId: 2209]
(2)
1a
d4ay8a_
A:
1b
d4ay8b_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (118 KB)
Header - Asym.Unit
Biol.Unit 1 (58 KB)
Header - Biol.Unit 1
Biol.Unit 2 (57 KB)
Header - Biol.Unit 2
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