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4AY6
Asym. Unit
Info
Asym.Unit (463 KB)
Biol.Unit 1 (120 KB)
Biol.Unit 2 (119 KB)
Biol.Unit 3 (119 KB)
Biol.Unit 4 (120 KB)
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(1)
Title
:
HUMAN O-GLCNAC TRANSFERASE (OGT) IN COMPLEX WITH UDP-5SGLCNAC AND SUBSTRATE PEPTIDE
Authors
:
M. Schimpl, X. Zheng, D. E. Blair, A. W. Schuettelkopf, I. Navratilova, T. Aristotelous, A. T. Ferenbach, M. A. Macnaughtan, V. S. Borodkin, D. M. F. Van Aalten
Date
:
18 Jun 12 (Deposition) - 24 Oct 12 (Release) - 12 Dec 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.30
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,E (1x)
Biol. Unit 2: B,F (1x)
Biol. Unit 3: C,G (1x)
Biol. Unit 4: D,H (1x)
Keywords
:
Transferase, Glycosyl Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Schimpl, X. Zheng, V. S. Borodkin, D. E. Blair, A. T. Ferenbach, A. W. Schuettelkopf, I. Navratilova, T. Aristotelous, O. Albarbarawi, D. A. Robinson, M. A. Macnaughtan, D. M. F. Van Aalten
O-Glcnac Transferase Invokes Nucleotide Sugar Pyrophosphate Participation In Catalysis
Nat. Chem. Biol. V. 8 969 2012
[
close entry info
]
Hetero Components
(3, 12)
Info
All Hetero Components
1a: (2S,3R,4R,5S,6R)-3-(ACETYLAMINO)-4... (12Va)
1b: (2S,3R,4R,5S,6R)-3-(ACETYLAMINO)-4... (12Vb)
1c: (2S,3R,4R,5S,6R)-3-(ACETYLAMINO)-4... (12Vc)
1d: (2S,3R,4R,5S,6R)-3-(ACETYLAMINO)-4... (12Vd)
2a: 3-AMINO-ALANINE (DNPa)
2b: 3-AMINO-ALANINE (DNPb)
2c: 3-AMINO-ALANINE (DNPc)
2d: 3-AMINO-ALANINE (DNPd)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
12V
4
Ligand/Ion
(2S,3R,4R,5S,6R)-3-(ACETYLAMINO)-4,5-DIHYDROXY-6-(HYDROXYMETHYL)TETRAHYDRO-2H-THIOPYRAN-2-YL [(2R,3S,4R,5R)-5-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGENDIPHOSPHATE
2
DNP
4
Mod. Amino Acid
3-AMINO-ALANINE
3
SO4
4
Ligand/Ion
SULFATE ION
[
close Hetero Component info
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:634 , GLY A:635 , GLN E:1398 , SER E:1399
BINDING SITE FOR RESIDUE SO4 A1100
2
AC2
SOFTWARE
HIS A:498 , PRO A:559 , THR A:560 , HIS A:562 , LEU A:653 , GLY A:654 , PRO A:656 , GLN A:839 , TYR A:841 , LYS A:842 , LEU A:866 , ALA A:896 , LYS A:898 , HIS A:901 , ARG A:904 , CYS A:917 , HIS A:920 , THR A:921 , THR A:922 , ASP A:925 , VAL E:1392 , TYR E:1394 , DNP E:1395
BINDING SITE FOR RESIDUE 12V A1200
3
AC3
SOFTWARE
LYS B:634 , GLY B:635 , GLN F:1398 , SER F:1399
BINDING SITE FOR RESIDUE SO4 B1100
4
AC4
SOFTWARE
HIS B:498 , THR B:560 , LEU B:653 , GLY B:654 , PRO B:656 , GLN B:839 , TYR B:841 , LYS B:842 , LEU B:866 , VAL B:895 , ALA B:896 , LYS B:898 , HIS B:901 , ARG B:904 , CYS B:917 , HIS B:920 , THR B:921 , THR B:922 , ASP B:925 , VAL F:1392 , PRO F:1393 , TYR F:1394 , DNP F:1395
BINDING SITE FOR RESIDUE 12V B1200
5
AC5
SOFTWARE
LYS C:634 , GLY C:635 , GLN G:1398 , SER G:1399
BINDING SITE FOR RESIDUE SO4 C1100
6
AC6
SOFTWARE
HIS C:498 , PRO C:559 , THR C:560 , LEU C:653 , GLY C:654 , PRO C:656 , GLN C:839 , TYR C:841 , LYS C:842 , LEU C:866 , VAL C:895 , ALA C:896 , LYS C:898 , HIS C:901 , ARG C:904 , CYS C:917 , HIS C:920 , THR C:921 , THR C:922 , ASP C:925 , VAL G:1392 , TYR G:1394 , DNP G:1395
BINDING SITE FOR RESIDUE 12V C1200
7
AC7
SOFTWARE
LYS D:634 , GLY D:635 , GLN H:1398 , SER H:1399
BINDING SITE FOR RESIDUE SO4 D1100
8
AC8
SOFTWARE
HIS D:498 , PRO D:559 , THR D:560 , LEU D:653 , GLY D:654 , PRO D:656 , GLN D:839 , TYR D:841 , LYS D:842 , LEU D:866 , VAL D:895 , ALA D:896 , LYS D:898 , HIS D:901 , ARG D:904 , CYS D:917 , HIS D:920 , THR D:921 , THR D:922 , ASP D:925 , VAL H:1392 , TYR H:1394 , DNP H:1395
BINDING SITE FOR RESIDUE 12V D1200
[
close Site info
]
SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_064736 (L528P, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_064736
L
538
P
OGT1_HUMAN
Unclassified
---
A/B/C/D
L
528
P
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 16)
Info
All PROSITE Patterns/Profiles
1: TPR (-|-|-|-|-|-|-|-|A:317-350,B:317-35...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TPR
PS50005
TPR repeat profile.
OGT1_HUMAN
21-54
89-122
123-156
157-190
191-224
225-258
259-292
293-326
327-360
361-394
395-428
429-462
16
-
-
-
-
-
-
-
-
A:317-350
B:317-350
C:317-350
D:317-350
A:351-384
B:351-384
C:351-384
D:351-384
A:385-418
B:385-418
C:385-418
D:385-418
A:419-452
B:419-452
C:419-452
D:419-452
[
close PROSITE info
]
Exons
(16, 64)
Info
All Exons
Exon 1.11b (E:1389-1399 | F:1389-1399 | G:1389...)
Exon 2.10b (A:312-345 | B:312-345 | C:312-345 ...)
Exon 2.11c (A:346-379 | B:346-379 | C:346-379 ...)
Exon 2.12c (A:379-430 | B:379-430 | C:379-430 ...)
Exon 2.13 (A:431-464 | B:431-464 | C:431-464 ...)
Exon 2.14 (A:465-524 | B:465-524 | C:465-524 ...)
Exon 2.15 (A:525-577 | B:525-577 | C:525-577 ...)
Exon 2.16 (A:578-607 | B:578-607 | C:578-607 ...)
Exon 2.17 (A:608-649 | B:608-649 | C:608-649 ...)
Exon 2.18 (A:650-706 | B:650-706 | C:650-706 ...)
Exon 2.19 (A:707-745 (gaps) | B:707-745 (gaps...)
Exon 2.20 (A:746-802 (gaps) | B:746-802 (gaps...)
Exon 2.21a (A:803-853 | B:803-853 | C:803-853 ...)
Exon 2.22a (A:854-938 | B:854-938 | C:854-938 ...)
Exon 2.23 (A:938-979 | B:938-979 | C:938-979 ...)
Exon 2.24d (A:979-1028 | B:979-1028 | C:979-10...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.10/1.11b
02: Boundary 1.11b/1.12
03: Boundary 2.9b/2.10b
04: Boundary 2.10b/2.11c
05: Boundary 2.11c/2.12c
06: Boundary 2.12c/2.13
07: Boundary 2.13/2.14
08: Boundary 2.14/2.15
09: Boundary 2.15/2.16
10: Boundary 2.16/2.17
11: Boundary 2.17/2.18
12: Boundary 2.18/2.19
13: Boundary 2.19/2.20
14: Boundary 2.20/2.21a
15: Boundary 2.21a/2.22a
16: Boundary 2.22a/2.23
17: Boundary 2.23/2.24d
18: Boundary 2.24d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000216160
1a
ENSE00001313059
chr22:
39795746-39795840
95
TAB1_HUMAN
1-11
11
0
-
-
1.3d
ENST00000216160
3d
ENSE00000880355
chr22:
39811011-39811147
137
TAB1_HUMAN
12-57
46
0
-
-
1.4a
ENST00000216160
4a
ENSE00000654725
chr22:
39811505-39811658
154
TAB1_HUMAN
57-108
52
0
-
-
1.5e
ENST00000216160
5e
ENSE00000654726
chr22:
39812796-39812882
87
TAB1_HUMAN
109-137
29
0
-
-
1.6b
ENST00000216160
6b
ENSE00000654728
chr22:
39813716-39813854
139
TAB1_HUMAN
138-184
47
0
-
-
1.7b
ENST00000216160
7b
ENSE00000654729
chr22:
39814737-39814850
114
TAB1_HUMAN
184-222
39
0
-
-
1.8
ENST00000216160
8
ENSE00000654730
chr22:
39815524-39815635
112
TAB1_HUMAN
222-259
38
0
-
-
1.9c
ENST00000216160
9c
ENSE00000654731
chr22:
39817832-39817976
145
TAB1_HUMAN
259-307
49
0
-
-
1.10
ENST00000216160
10
ENSE00000654732
chr22:
39822708-39822930
223
TAB1_HUMAN
308-382
75
0
-
-
1.11b
ENST00000216160
11b
ENSE00000654734
chr22:
39824026-39824188
163
TAB1_HUMAN
382-436
55
4
E:1389-1399
F:1389-1399
G:1389-1399
H:1389-1399
11
11
11
11
1.12
ENST00000216160
12
ENSE00001109364
chr22:
39826020-39827887
1868
TAB1_HUMAN
436-504
69
0
-
-
2.1a
ENST00000373719
1a
ENSE00001225746
X:70752933-70753186
254
OGT1_HUMAN
1-13
13
0
-
-
2.3a
ENST00000373719
3a
ENSE00001632316
X:70756028-70756208
181
OGT1_HUMAN
13-73
61
0
-
-
2.5
ENST00000373719
5
ENSE00000978988
X:70757679-70757922
244
OGT1_HUMAN
73-154
82
0
-
-
2.6b
ENST00000373719
6b
ENSE00000978989
X:70764417-70764485
69
OGT1_HUMAN
155-177
23
0
-
-
2.6f
ENST00000373719
6f
ENSE00001154534
X:70767757-70767873
117
OGT1_HUMAN
178-216
39
0
-
-
2.8
ENST00000373719
8
ENSE00001387445
X:70774363-70774442
80
OGT1_HUMAN
217-243
27
0
-
-
2.9b
ENST00000373719
9b
ENSE00001160307
X:70775040-70775235
196
OGT1_HUMAN
243-308
66
0
-
-
2.10b
ENST00000373719
10b
ENSE00001374459
X:70775804-70775944
141
OGT1_HUMAN
309-355
47
4
A:312-345
B:312-345
C:312-345
D:312-345
34
34
34
34
2.11c
ENST00000373719
11c
ENSE00001371885
X:70776530-70776630
101
OGT1_HUMAN
356-389
34
4
A:346-379
B:346-379
C:346-379
D:346-379
34
34
34
34
2.12c
ENST00000373719
12c
ENSE00001387530
X:70776802-70776955
154
OGT1_HUMAN
389-440
52
4
A:379-430
B:379-430
C:379-430
D:379-430
52
52
52
52
2.13
ENST00000373719
13
ENSE00001386377
X:70777045-70777146
102
OGT1_HUMAN
441-474
34
4
A:431-464
B:431-464
C:431-464
D:431-464
34
34
34
34
2.14
ENST00000373719
14
ENSE00001373577
X:70777343-70777522
180
OGT1_HUMAN
475-534
60
4
A:465-524
B:465-524
C:465-524
D:465-524
60
60
60
60
2.15
ENST00000373719
15
ENSE00001371266
X:70779117-70779275
159
OGT1_HUMAN
535-587
53
4
A:525-577
B:525-577
C:525-577
D:525-577
53
53
53
53
2.16
ENST00000373719
16
ENSE00000979031
X:70779438-70779527
90
OGT1_HUMAN
588-617
30
4
A:578-607
B:578-607
C:578-607
D:578-607
30
30
30
30
2.17
ENST00000373719
17
ENSE00000979032
X:70781625-70781750
126
OGT1_HUMAN
618-659
42
4
A:608-649
B:608-649
C:608-649
D:608-649
42
42
42
42
2.18
ENST00000373719
18
ENSE00000979033
X:70782697-70782867
171
OGT1_HUMAN
660-716
57
4
A:650-706
B:650-706
C:650-706
D:650-706
57
57
57
57
2.19
ENST00000373719
19
ENSE00000979034
X:70782980-70783096
117
OGT1_HUMAN
717-755
39
4
A:707-745 (gaps)
B:707-745 (gaps)
C:707-745 (gaps)
D:707-745 (gaps)
39
39
39
39
2.20
ENST00000373719
20
ENSE00001385236
X:70783179-70783349
171
OGT1_HUMAN
756-812
57
4
A:746-802 (gaps)
B:746-802 (gaps)
C:746-802 (gaps)
D:746-802 (gaps)
57
57
57
57
2.21a
ENST00000373719
21a
ENSE00001368007
X:70784451-70784603
153
OGT1_HUMAN
813-863
51
4
A:803-853
B:803-853
C:803-853
D:803-853
51
51
51
51
2.22a
ENST00000373719
22a
ENSE00001389126
X:70787350-70787602
253
OGT1_HUMAN
864-948
85
4
A:854-938
B:854-938
C:854-938
D:854-938
85
85
85
85
2.23
ENST00000373719
23
ENSE00001160190
X:70787843-70787966
124
OGT1_HUMAN
948-989
42
4
A:938-979
B:938-979
C:938-979
D:938-979
42
42
42
42
2.24d
ENST00000373719
24d
ENSE00001820698
X:70793470-70795747
2278
OGT1_HUMAN
989-1046
58
4
A:979-1028
B:979-1028
C:979-1028
D:979-1028
50
50
50
50
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Asym.Unit (463 KB)
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