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4AXM
Biol. Unit 2
Info
Asym.Unit (453 KB)
Biol.Unit 1 (78 KB)
Biol.Unit 2 (79 KB)
Biol.Unit 3 (78 KB)
Biol.Unit 4 (79 KB)
Biol.Unit 5 (79 KB)
Biol.Unit 6 (79 KB)
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(1)
Title
:
TRIAZINE CATHEPSIN INHIBITOR COMPLEX
Authors
:
V. Ehmke, F. Diederich, D. W. Banner, J. Benz
Date
:
13 Jun 12 (Deposition) - 08 May 13 (Release) - 12 Jun 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,F,I,L,O
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: F (1x)
Biol. Unit 4: I (1x)
Biol. Unit 5: L (1x)
Biol. Unit 6: O (1x)
Keywords
:
Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. Ehmke, E. Winkler, D. W. Banner, W. Haap, W. B. Schweizer, M. Rottmann, M. Kaiser, C. Freymond, T. Schirmeister, F. Diederich
Optimization Of Triazine Nitriles As Rhodesain Inhibitors: Structure-Activity Relationships, Bioisosteric Imidazopyridine Nitriles, And X-Ray Crystal Structure Analysis With Human Cathepsin L
Chemmedchem V. 8 967 2013
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
2a: 4-[(4-CHLOROBENZYL)(CYCLOHEXYL)AMI... (V65a)
2b: 4-[(4-CHLOROBENZYL)(CYCLOHEXYL)AMI... (V65b)
2c: 4-[(4-CHLOROBENZYL)(CYCLOHEXYL)AMI... (V65c)
2d: 4-[(4-CHLOROBENZYL)(CYCLOHEXYL)AMI... (V65d)
2e: 4-[(4-CHLOROBENZYL)(CYCLOHEXYL)AMI... (V65e)
2f: 4-[(4-CHLOROBENZYL)(CYCLOHEXYL)AMI... (V65f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
1
Ligand/Ion
GLYCEROL
2
V65
1
Ligand/Ion
4-[(4-CHLOROBENZYL)(CYCLOHEXYL)AMINO]-6-MORPHOLIN-4-YL-1,3,5-TRIAZINE-2-CARBOXAMIDE
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Sites
(1, 1)
Info
All Sites
1: AC4 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC4
SOFTWARE
GLN B:19 , GLY B:23 , SER B:24 , CYS B:25 , ASN B:66 , GLY B:67 , GLY B:68 , LEU B:69 , ARG F:206
BINDING SITE FOR RESIDUE V65 B1222
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: THIOL_PROTEASE_CYS (B:19-30)
2: THIOL_PROTEASE_HIS (B:161-171)
3: THIOL_PROTEASE_ASN (B:182-201)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOL_PROTEASE_CYS
PS00139
Eukaryotic thiol (cysteine) proteases cysteine active site.
CATL1_HUMAN
132-143
1
-
B:19-30
-
-
-
-
2
THIOL_PROTEASE_HIS
PS00639
Eukaryotic thiol (cysteine) proteases histidine active site.
CATL1_HUMAN
274-284
1
-
B:161-171
-
-
-
-
3
THIOL_PROTEASE_ASN
PS00640
Eukaryotic thiol (cysteine) proteases asparagine active site.
CATL1_HUMAN
295-314
1
-
B:182-201
-
-
-
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d4axma_ (A:)
1b: SCOP_d4axmb_ (B:)
1c: SCOP_d4axmf_ (F:)
1d: SCOP_d4axmi_ (I:)
1e: SCOP_d4axml_ (L:)
1f: SCOP_d4axmo_ (O:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cysteine proteinases
(392)
Superfamily
:
Cysteine proteinases
(392)
Family
:
automated matches
(52)
Protein domain
:
automated matches
(52)
Human (Homo sapiens) [TaxId: 9606]
(30)
1a
d4axma_
A:
1b
d4axmb_
B:
1c
d4axmf_
F:
1d
d4axmi_
I:
1e
d4axml_
L:
1f
d4axmo_
O:
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CATH Domains
(0, 0)
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Pfam Domains
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Chain B
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (453 KB)
Header - Asym.Unit
Biol.Unit 1 (78 KB)
Header - Biol.Unit 1
Biol.Unit 2 (79 KB)
Header - Biol.Unit 2
Biol.Unit 3 (78 KB)
Header - Biol.Unit 3
Biol.Unit 4 (79 KB)
Header - Biol.Unit 4
Biol.Unit 5 (79 KB)
Header - Biol.Unit 5
Biol.Unit 6 (79 KB)
Header - Biol.Unit 6
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