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4AX7
Asym. Unit
Info
Asym.Unit (265 KB)
Biol.Unit 1 (70 KB)
Biol.Unit 2 (68 KB)
Biol.Unit 3 (69 KB)
Biol.Unit 4 (68 KB)
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(1)
Title
:
HYPOCREA JECORINA CEL6A D221A MUTANT SOAKED WITH 4-METHYLUMBELLIFERYL-BETA-D-CELLOBIOSIDE
Authors
:
M. Wu, W. Nerinckx, K. Piens, T. Ishida, H. Hansson, J. Stahlberg, M. San
Date
:
11 Jun 12 (Deposition) - 23 Jan 13 (Release) - 23 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Hydrolase, Hydrolase(O-Glycosyl), Glycosidase, Glycoside Hydrolase, Gh6, Mufg2, Cellulase, Glycoprotein, Fluorogenic Substrate
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Wu, W. Nerinckx, K. Piens, T. Ishida, H. Hansson, M. Sandgren, J. Stahlberg
Rational Design, Synthesis, Evaluation And Enzyme-Substrate Structures Of Improved Fluorogenic Substrates For Family 6 Glycoside Hydrolases.
Febs J. V. 280 184 2013
[
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Hetero Components
(4, 51)
Info
All Hetero Components
1a: 7-HYDROXY-4-METHYL-2H-CHROMEN-2-ON... (4MUa)
1b: 7-HYDROXY-4-METHYL-2H-CHROMEN-2-ON... (4MUb)
1c: 7-HYDROXY-4-METHYL-2H-CHROMEN-2-ON... (4MUc)
1d: 7-HYDROXY-4-METHYL-2H-CHROMEN-2-ON... (4MUd)
2a: BETA-D-GLUCOSE (BGCa)
2b: BETA-D-GLUCOSE (BGCb)
2c: BETA-D-GLUCOSE (BGCc)
2d: BETA-D-GLUCOSE (BGCd)
2e: BETA-D-GLUCOSE (BGCe)
2f: BETA-D-GLUCOSE (BGCf)
2g: BETA-D-GLUCOSE (BGCg)
2h: BETA-D-GLUCOSE (BGCh)
2i: BETA-D-GLUCOSE (BGCi)
2j: BETA-D-GLUCOSE (BGCj)
2k: BETA-D-GLUCOSE (BGCk)
2l: BETA-D-GLUCOSE (BGCl)
3a: ALPHA-D-MANNOSE (MANa)
3aa: ALPHA-D-MANNOSE (MANaa)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
3e: ALPHA-D-MANNOSE (MANe)
3f: ALPHA-D-MANNOSE (MANf)
3g: ALPHA-D-MANNOSE (MANg)
3h: ALPHA-D-MANNOSE (MANh)
3i: ALPHA-D-MANNOSE (MANi)
3j: ALPHA-D-MANNOSE (MANj)
3k: ALPHA-D-MANNOSE (MANk)
3l: ALPHA-D-MANNOSE (MANl)
3m: ALPHA-D-MANNOSE (MANm)
3n: ALPHA-D-MANNOSE (MANn)
3o: ALPHA-D-MANNOSE (MANo)
3p: ALPHA-D-MANNOSE (MANp)
3q: ALPHA-D-MANNOSE (MANq)
3r: ALPHA-D-MANNOSE (MANr)
3s: ALPHA-D-MANNOSE (MANs)
3t: ALPHA-D-MANNOSE (MANt)
3u: ALPHA-D-MANNOSE (MANu)
3v: ALPHA-D-MANNOSE (MANv)
3w: ALPHA-D-MANNOSE (MANw)
3x: ALPHA-D-MANNOSE (MANx)
3y: ALPHA-D-MANNOSE (MANy)
3z: ALPHA-D-MANNOSE (MANz)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
4MU
4
Ligand/Ion
7-HYDROXY-4-METHYL-2H-CHROMEN-2-ONE
2
BGC
12
Ligand/Ion
BETA-D-GLUCOSE
3
MAN
27
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(39, 39)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:87 , TYR A:88 , LYS A:356 , ASN A:441 , HOH A:2254 , HOH A:2313
BINDING SITE FOR MONO-SACCHARIDE MAN A 503 BOUND TO THR A 87
02
AC2
SOFTWARE
VAL A:96 , THR A:97 , GLY A:160 , ASN A:161 , MAN D:509
BINDING SITE FOR MONO-SACCHARIDE MAN A 504 BOUND TO THR A 97
03
AC3
SOFTWARE
TYR A:103 , SER A:106 , GLU A:107 , LEU A:111 , MAN A:507
BINDING SITE FOR MONO-SACCHARIDE MAN A 505 BOUND TO SER A 106
04
AC4
SOFTWARE
ALA A:105 , SER A:109 , ALA A:125 , ALA A:128 , LYS A:129 , HOH A:2049 , HOH A:2320 , HOH A:2321 , ASN C:339 , HIS C:340
BINDING SITE FOR MONO-SACCHARIDE MAN A 506 BOUND TO SER A 109
05
AC5
SOFTWARE
SER A:106 , SER A:110 , MAN A:505 , HOH A:2322 , GLN C:281 , ASN C:285
BINDING SITE FOR MONO-SACCHARIDE MAN A 507 BOUND TO SER A 110
06
AC6
SOFTWARE
SER A:115 , GLN A:432 , HOH A:2029 , HOH A:2305 , HOH A:2323 , HOH A:2324
BINDING SITE FOR MONO-SACCHARIDE MAN A 508 BOUND TO SER A 115
07
AC7
SOFTWARE
GLY A:118 , THR A:122 , HOH A:2327 , HOH A:2328 , ALA D:150 , THR D:154
BINDING SITE FOR MONO-SACCHARIDE MAN A 509 BOUND TO THR A 122
08
AC8
SOFTWARE
LEU A:243 , GLU A:244 , ASN A:247 , ASN A:289 , HOH A:2174 , HOH A:2179
BINDING SITE FOR MONO-SACCHARIDE NAG A 501 BOUND TO ASN A 289
09
AC9
SOFTWARE
TRP A:309 , ASN A:310 , THR A:312 , THR A:383 , HOH A:2218 , HOH A:2220 , HOH A:2233 , GLN B:204 , ASP B:405 , SER B:406 , HOH B:2246
BINDING SITE FOR MONO-SACCHARIDE NAG A 502 BOUND TO ASN A 310
10
BC1
SOFTWARE
TRP A:135 , ASP A:137 , TYR A:169 , ASP A:175 , ALA A:178 , SER A:181 , PRO A:220 , ALA A:221 , ASN A:229 , HIS A:266 , GLY A:268 , TRP A:269 , TRP A:272 , ASN A:275 , ALA A:304 , ASN A:305 , GLY A:365 , TRP A:367 , LYS A:395 , PRO A:396 , GLU A:399 , ASP A:401 , HOH A:2095 , HOH A:2101 , HOH A:2103 , HOH A:2104 , HOH A:2108 , HOH A:2112 , HOH A:2160 , HOH A:2193 , HOH A:2209 , HOH A:2212 , HOH A:2284 , HOH A:2329
BINDING SITE FOR CHAIN A OF POLYSACCHARIDE RESIDUES 600 TO 604
11
BC2
SOFTWARE
THR B:87 , TYR B:88 , LYS B:356 , GLY B:372 , ASN B:441 , HOH B:2226 , HOH B:2271 , HOH B:2272 , HOH B:2277
BINDING SITE FOR MONO-SACCHARIDE MAN B 503 BOUND TO THR B 87
12
BC3
SOFTWARE
THR B:97 , HOH B:2075
BINDING SITE FOR MONO-SACCHARIDE MAN B 504 BOUND TO THR B 97
13
BC4
SOFTWARE
TYR B:103 , SER B:106 , LEU B:111 , MAN B:507 , HOH B:2279
BINDING SITE FOR MONO-SACCHARIDE MAN B 505 BOUND TO SER B 106
14
BC5
SOFTWARE
ALA B:105 , SER B:109 , ALA B:125 , ALA B:128 , LYS B:129 , HOH B:2280 , ASN C:158 , GLY C:159 , GLY C:160 , HOH C:2055
BINDING SITE FOR MONO-SACCHARIDE MAN B 506 BOUND TO SER B 109
15
BC6
SOFTWARE
SER B:106 , SER B:110 , MAN B:505 , HOH B:2281 , HOH B:2282 , HOH B:2283 , ASN C:158
BINDING SITE FOR MONO-SACCHARIDE MAN B 507 BOUND TO SER B 110
16
BC7
SOFTWARE
GLY A:320 , ALA A:322 , SER B:115 , GLN B:432 , HOH B:2262 , HOH B:2284
BINDING SITE FOR MONO-SACCHARIDE MAN B 508 BOUND TO SER B 115
17
BC8
SOFTWARE
GLY B:118 , THR B:122 , HOH B:2285
BINDING SITE FOR MONO-SACCHARIDE MAN B 509 BOUND TO THR B 122
18
BC9
SOFTWARE
LEU B:243 , ASN B:247 , ASN B:289 , HOH B:2152
BINDING SITE FOR MONO-SACCHARIDE NAG B 501 BOUND TO ASN B 289
19
CC1
SOFTWARE
GLN A:204 , ASP A:405 , SER A:406 , HOH A:2138 , TRP B:309 , ASN B:310 , THR B:383 , PHE B:391 , HOH B:2180 , HOH B:2238
BINDING SITE FOR MONO-SACCHARIDE NAG B 502 BOUND TO ASN B 310
20
CC2
SOFTWARE
TRP B:135 , ASP B:137 , TYR B:169 , ASP B:175 , TRP B:367 , LYS B:395 , GLU B:399 , ASP B:401 , HOH B:2087 , HOH B:2172 , HOH B:2240 , HOH B:2287
BINDING SITE FOR CHAIN B OF POLYSACCHARIDE RESIDUES 600 TO 602
21
CC3
SOFTWARE
THR C:97 , ASN C:161 , HOH C:2059
BINDING SITE FOR MONO-SACCHARIDE MAN C 504 BOUND TO THR C 97
22
CC4
SOFTWARE
TYR C:103 , SER C:106 , GLU C:107 , LEU C:111 , MAN C:507
BINDING SITE FOR MONO-SACCHARIDE MAN C 505 BOUND TO SER C 106
23
CC5
SOFTWARE
ASN A:339 , HOH A:2196 , ALA C:105 , SER C:109 , ALA C:125 , ALA C:128 , LYS C:129 , HOH C:2032
BINDING SITE FOR MONO-SACCHARIDE MAN C 506 BOUND TO SER C 109
24
CC6
SOFTWARE
GLN A:281 , HIS A:340 , SER C:106 , SER C:110 , MAN C:505 , HOH C:2278
BINDING SITE FOR MONO-SACCHARIDE MAN C 507 BOUND TO SER C 110
25
CC7
SOFTWARE
SER C:115 , GLN C:432 , HOH C:2019 , HOH C:2022 , HOH C:2268 , HOH C:2279 , ALA D:322 , HOH D:2164 , HOH D:2165
BINDING SITE FOR MONO-SACCHARIDE MAN C 508 BOUND TO SER C 115
26
CC8
SOFTWARE
LYS B:157 , GLY C:118 , THR C:122 , HOH C:2280
BINDING SITE FOR MONO-SACCHARIDE MAN C 509 BOUND TO THR C 122
27
CC9
SOFTWARE
LEU C:243 , GLU C:244 , ASN C:247 , ASN C:289 , HOH C:2148 , HOH C:2155
BINDING SITE FOR MONO-SACCHARIDE NAG C 501 BOUND TO ASN C 289
28
DC1
SOFTWARE
TRP C:309 , ASN C:310 , THR C:312 , HOH C:2184 , ASP D:405 , SER D:406 , HOH D:2221
BINDING SITE FOR MONO-SACCHARIDE NAG C 502 BOUND TO ASN C 310
29
DC2
SOFTWARE
TRP C:135 , ASP C:137 , TYR C:169 , ASP C:175 , ALA C:178 , SER C:181 , ASN C:229 , HIS C:266 , GLY C:268 , TRP C:269 , TRP C:272 , ASN C:275 , ALA C:304 , ASN C:305 , TRP C:367 , LYS C:395 , PRO C:396 , GLU C:399 , ASP C:401 , HOH C:2065 , HOH C:2071 , HOH C:2074 , HOH C:2075 , HOH C:2078 , HOH C:2084 , HOH C:2128 , HOH C:2175 , HOH C:2177 , HOH C:2247 , HOH C:2285
BINDING SITE FOR CHAIN C OF POLYSACCHARIDE RESIDUES 600 TO 604
30
DC3
SOFTWARE
THR D:85 , THR D:87 , LYS D:356 , ASN D:441
BINDING SITE FOR MONO-SACCHARIDE MAN D 503 BOUND TO THR D 87
31
DC4
SOFTWARE
THR D:97 , TYR D:162
BINDING SITE FOR MONO-SACCHARIDE MAN D 504 BOUND TO THR D 97
32
DC5
SOFTWARE
TYR D:103 , SER D:106 , LEU D:111 , MAN D:507 , HOH D:2248 , HOH D:2249
BINDING SITE FOR MONO-SACCHARIDE MAN D 505 BOUND TO SER D 106
33
DC6
SOFTWARE
HOH A:2319 , ALA D:105 , SER D:109 , ALA D:125 , ALA D:128 , LYS D:129 , HOH D:2039 , HOH D:2250 , HOH D:2251
BINDING SITE FOR MONO-SACCHARIDE MAN D 506 BOUND TO SER D 109
34
DC7
SOFTWARE
SER D:106 , SER D:110 , MAN D:505 , HOH D:2249 , HOH D:2252
BINDING SITE FOR MONO-SACCHARIDE MAN D 507 BOUND TO SER D 110
35
DC8
SOFTWARE
ALA C:322 , HOH C:2199 , HOH C:2200 , SER D:115 , GLN D:432 , HOH D:2020 , HOH D:2022 , HOH D:2235 , HOH D:2253 , HOH D:2254 , HOH D:2255
BINDING SITE FOR MONO-SACCHARIDE MAN D 508 BOUND TO SER D 115
36
DC9
SOFTWARE
ASN A:161 , MAN A:504 , ASP B:189 , GLY D:118 , THR D:122
BINDING SITE FOR MONO-SACCHARIDE MAN D 509 BOUND TO THR D 122
37
EC1
SOFTWARE
LEU D:243 , GLU D:244 , ASN D:247 , ASN D:289 , HOH D:2120
BINDING SITE FOR MONO-SACCHARIDE NAG D 501 BOUND TO ASN D 289
38
EC2
SOFTWARE
ASP C:405 , SER C:406 , HOH C:2250 , TRP D:309 , ASN D:310 , THR D:312 , HOH D:2148
BINDING SITE FOR MONO-SACCHARIDE NAG D 502 BOUND TO ASN D 310
39
EC3
SOFTWARE
TRP D:135 , ASP D:137 , TYR D:169 , ASP D:175 , ALA D:178 , TRP D:367 , LYS D:395 , GLU D:399 , ASP D:401 , HOH D:2072 , HOH D:2141 , HOH D:2199 , HOH D:2216 , HOH D:2257
BINDING SITE FOR CHAIN D OF POLYSACCHARIDE RESIDUES 600 TO 602
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: GLYCOSYL_HYDROL_F6_1 (A:167-183,B:167-183,C:167-183,D:16...)
2: GLYCOSYL_HYDROL_F6_2 (A:215-224,B:215-224,C:215-224,D:21...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLYCOSYL_HYDROL_F6_1
PS00655
Glycosyl hydrolases family 6 signature 1.
GUX2_HYPJE
191-207
4
A:167-183
B:167-183
C:167-183
D:167-183
2
GLYCOSYL_HYDROL_F6_2
PS00656
Glycosyl hydrolases family 6 signature 2.
GUX2_HYPJE
239-248
4
A:215-224
B:215-224
C:215-224
D:215-224
[
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]
Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4ax7a_ (A:)
1b: SCOP_d4ax7b_ (B:)
1c: SCOP_d4ax7c_ (C:)
1d: SCOP_d4ax7d_ (D:)
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Class
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Alpha and beta proteins (a/b)
(23833)
Fold
:
7-stranded beta/alpha barrel
(137)
Superfamily
:
Glycosyl hydrolases family 6, cellulases
(42)
Family
:
Glycosyl hydrolases family 6, cellulases
(34)
Protein domain
:
automated matches
(8)
Trichoderma reesei [TaxId: 51453]
(2)
1a
d4ax7a_
A:
1b
d4ax7b_
B:
1c
d4ax7c_
C:
1d
d4ax7d_
D:
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