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4AX6
Biol. Unit 2
Info
Asym.Unit (130 KB)
Biol.Unit 1 (64 KB)
Biol.Unit 2 (63 KB)
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(1)
Title
:
HYPOCREA JECORINA CEL6A D221A MUTANT SOAKED WITH 6-CHLORO-4-PHENYLUMBELLIFERYL-BETA-CELLOBIOSIDE
Authors
:
M. Wu, W. Nerinckx, K. Piens, T. Ishida, H. Hansson, J. Stahlberg, M. San
Date
:
10 Jun 12 (Deposition) - 23 Jan 13 (Release) - 23 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase, Hydrolase(O-Glycosyl), Glycosidase, Glycoside Hydrolase, Gh6, Clphufg2, Cellulase, Cellobiohydrolase, Glycoprotein, Fluorogenic Substrate
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Wu, W. Nerinckx, K. Piens, T. Ishida, H. Hansson, M. Sandgren, J. Stahlberg
Rational Design, Synthesis, Evaluation And Enzyme-Substrate Structures Of Improved Fluorogenic Substrates For Family 6 Glycoside Hydrolases.
Febs J. V. 280 184 2013
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Hetero Components
(4, 10)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
1b: BETA-D-GLUCOSE (BGCb)
1c: BETA-D-GLUCOSE (BGCc)
1d: BETA-D-GLUCOSE (BGCd)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
2e: ALPHA-D-MANNOSE (MANe)
2f: ALPHA-D-MANNOSE (MANf)
2g: ALPHA-D-MANNOSE (MANg)
2h: ALPHA-D-MANNOSE (MANh)
2i: ALPHA-D-MANNOSE (MANi)
2j: ALPHA-D-MANNOSE (MANj)
2k: ALPHA-D-MANNOSE (MANk)
2l: ALPHA-D-MANNOSE (MANl)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4a: 6-CHLORANYL-7-OXIDANYL-4-PHENYL-CH... (UWUa)
4b: 6-CHLORANYL-7-OXIDANYL-4-PHENYL-CH... (UWUb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BGC
2
Ligand/Ion
BETA-D-GLUCOSE
2
MAN
5
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
UWU
1
Ligand/Ion
6-CHLORANYL-7-OXIDANYL-4-PHENYL-CHROMEN-2-ONE
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Sites
(12, 12)
Info
All Sites
01: AC4 (SOFTWARE)
02: AC6 (SOFTWARE)
03: AC7 (SOFTWARE)
04: AC9 (SOFTWARE)
05: BC2 (SOFTWARE)
06: BC3 (SOFTWARE)
07: BC4 (SOFTWARE)
08: BC5 (SOFTWARE)
09: BC6 (SOFTWARE)
10: BC7 (SOFTWARE)
11: BC8 (SOFTWARE)
12: BC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC4
SOFTWARE
ALA A:105 , SER A:109 , ALA A:125 , ALA A:128 , LYS A:129 , GLY B:159 , HOH B:2052 , HOH B:2054
BINDING SITE FOR MONO-SACCHARIDE MAN A 506 BOUND TO SER A 109
02
AC6
SOFTWARE
SER A:115 , GLN A:432 , HOH A:2275 , HOH A:2295 , ALA B:322
BINDING SITE FOR MONO-SACCHARIDE MAN A 508 BOUND TO SER A 115
03
AC7
SOFTWARE
GLY A:118 , THR A:122 , ASP A:189 , HOH A:2298 , ASN B:161
BINDING SITE FOR MONO-SACCHARIDE MAN A 509 BOUND TO THR A 122
04
AC9
SOFTWARE
ASN A:310 , PHE A:391 , HOH A:2191 , HOH A:2252 , HOH A:2290 , ASP B:405
BINDING SITE FOR MONO-SACCHARIDE NAG A 502 BOUND TO ASN A 310
05
BC2
SOFTWARE
THR B:97 , HOH B:2057
BINDING SITE FOR MONO-SACCHARIDE MAN B 504 BOUND TO THR B 97
06
BC3
SOFTWARE
ALA B:105 , SER B:109 , ALA B:125 , LYS B:129 , ASN B:339
BINDING SITE FOR MONO-SACCHARIDE MAN B 506 BOUND TO SER B 109
07
BC4
SOFTWARE
GLN A:319 , SER B:106 , SER B:110 , GLN B:281 , HIS B:340
BINDING SITE FOR MONO-SACCHARIDE MAN B 507 BOUND TO SER B 110
08
BC5
SOFTWARE
ALA A:322 , HOH A:2208 , SER B:115 , GLN B:432
BINDING SITE FOR MONO-SACCHARIDE MAN B 508 BOUND TO SER B 115
09
BC6
SOFTWARE
ARG A:153 , THR A:154 , LYS A:157 , GLY B:118 , THR B:122
BINDING SITE FOR MONO-SACCHARIDE MAN B 509 BOUND TO THR B 122
10
BC7
SOFTWARE
LEU B:243 , GLU B:244 , ASN B:247 , ASN B:289 , HOH B:2138
BINDING SITE FOR MONO-SACCHARIDE NAG B 501 BOUND TO ASN B 289
11
BC8
SOFTWARE
ASP A:405 , SER A:406 , ASN B:310 , HOH B:2172 , HOH B:2174
BINDING SITE FOR MONO-SACCHARIDE NAG B 502 BOUND TO ASN B 310
12
BC9
SOFTWARE
TRP B:135 , ASP B:137 , TYR B:169 , ALA B:177 , ALA B:178 , SER B:181 , HIS B:266 , TRP B:269 , VAL B:303 , ALA B:304 , TRP B:367 , LYS B:395 , GLU B:399 , ASP B:401 , HOH B:2063 , HOH B:2071 , HOH B:2074 , HOH B:2075 , HOH B:2082 , HOH B:2165 , HOH B:2222
BINDING SITE FOR CHAIN B OF POLYSACCHARIDE RESIDUES 600 TO 602
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: GLYCOSYL_HYDROL_F6_1 (B:167-183)
2: GLYCOSYL_HYDROL_F6_2 (B:215-224)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLYCOSYL_HYDROL_F6_1
PS00655
Glycosyl hydrolases family 6 signature 1.
GUX2_HYPJE
191-207
1
-
B:167-183
2
GLYCOSYL_HYDROL_F6_2
PS00656
Glycosyl hydrolases family 6 signature 2.
GUX2_HYPJE
239-248
1
-
B:215-224
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4ax6a_ (A:)
1b: SCOP_d4ax6b_ (B:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
7-stranded beta/alpha barrel
(137)
Superfamily
:
Glycosyl hydrolases family 6, cellulases
(42)
Family
:
Glycosyl hydrolases family 6, cellulases
(34)
Protein domain
:
automated matches
(8)
Trichoderma reesei [TaxId: 51453]
(2)
1a
d4ax6a_
A:
1b
d4ax6b_
B:
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CATH Domains
(0, 0)
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Sorry, no Info available
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Pfam Domains
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Protein & NOT Site
Protein & NOT PROSITE
Chain B
Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (130 KB)
Header - Asym.Unit
Biol.Unit 1 (64 KB)
Header - Biol.Unit 1
Biol.Unit 2 (63 KB)
Header - Biol.Unit 2
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