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4AX6
Biol. Unit 1
Info
Asym.Unit (130 KB)
Biol.Unit 1 (64 KB)
Biol.Unit 2 (63 KB)
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(1)
Title
:
HYPOCREA JECORINA CEL6A D221A MUTANT SOAKED WITH 6-CHLORO-4-PHENYLUMBELLIFERYL-BETA-CELLOBIOSIDE
Authors
:
M. Wu, W. Nerinckx, K. Piens, T. Ishida, H. Hansson, J. Stahlberg, M. San
Date
:
10 Jun 12 (Deposition) - 23 Jan 13 (Release) - 23 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase, Hydrolase(O-Glycosyl), Glycosidase, Glycoside Hydrolase, Gh6, Clphufg2, Cellulase, Cellobiohydrolase, Glycoprotein, Fluorogenic Substrate
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Wu, W. Nerinckx, K. Piens, T. Ishida, H. Hansson, M. Sandgren, J. Stahlberg
Rational Design, Synthesis, Evaluation And Enzyme-Substrate Structures Of Improved Fluorogenic Substrates For Family 6 Glycoside Hydrolases.
Febs J. V. 280 184 2013
[
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Hetero Components
(4, 12)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
1b: BETA-D-GLUCOSE (BGCb)
1c: BETA-D-GLUCOSE (BGCc)
1d: BETA-D-GLUCOSE (BGCd)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
2e: ALPHA-D-MANNOSE (MANe)
2f: ALPHA-D-MANNOSE (MANf)
2g: ALPHA-D-MANNOSE (MANg)
2h: ALPHA-D-MANNOSE (MANh)
2i: ALPHA-D-MANNOSE (MANi)
2j: ALPHA-D-MANNOSE (MANj)
2k: ALPHA-D-MANNOSE (MANk)
2l: ALPHA-D-MANNOSE (MANl)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4a: 6-CHLORANYL-7-OXIDANYL-4-PHENYL-CH... (UWUa)
4b: 6-CHLORANYL-7-OXIDANYL-4-PHENYL-CH... (UWUb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BGC
2
Ligand/Ion
BETA-D-GLUCOSE
2
MAN
7
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
UWU
1
Ligand/Ion
6-CHLORANYL-7-OXIDANYL-4-PHENYL-CHROMEN-2-ONE
[
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC4 (SOFTWARE)
12: BC5 (SOFTWARE)
13: BC6 (SOFTWARE)
14: BC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:87 , LYS A:356 , GLY A:372 , HOH A:2282
BINDING SITE FOR MONO-SACCHARIDE MAN A 503 BOUND TO THR A 87
02
AC2
SOFTWARE
THR A:97 , ASN A:161 , HOH A:2293 , HOH A:2294
BINDING SITE FOR MONO-SACCHARIDE MAN A 504 BOUND TO THR A 97
03
AC3
SOFTWARE
TYR A:103 , SER A:106 , GLU A:107 , LEU A:111 , MAN A:507
BINDING SITE FOR MONO-SACCHARIDE MAN A 505 BOUND TO SER A 106
04
AC4
SOFTWARE
ALA A:105 , SER A:109 , ALA A:125 , ALA A:128 , LYS A:129 , GLY B:159 , HOH B:2052 , HOH B:2054
BINDING SITE FOR MONO-SACCHARIDE MAN A 506 BOUND TO SER A 109
05
AC5
SOFTWARE
SER A:106 , SER A:110 , MAN A:505
BINDING SITE FOR MONO-SACCHARIDE MAN A 507 BOUND TO SER A 110
06
AC6
SOFTWARE
SER A:115 , GLN A:432 , HOH A:2275 , HOH A:2295 , ALA B:322
BINDING SITE FOR MONO-SACCHARIDE MAN A 508 BOUND TO SER A 115
07
AC7
SOFTWARE
GLY A:118 , THR A:122 , ASP A:189 , HOH A:2298 , ASN B:161
BINDING SITE FOR MONO-SACCHARIDE MAN A 509 BOUND TO THR A 122
08
AC8
SOFTWARE
LEU A:243 , GLU A:244 , ASN A:247 , ASN A:289 , HOH A:2152
BINDING SITE FOR MONO-SACCHARIDE NAG A 501 BOUND TO ASN A 289
09
AC9
SOFTWARE
ASN A:310 , PHE A:391 , HOH A:2191 , HOH A:2252 , HOH A:2290 , ASP B:405
BINDING SITE FOR MONO-SACCHARIDE NAG A 502 BOUND TO ASN A 310
10
BC1
SOFTWARE
TRP A:135 , ASP A:137 , TYR A:169 , ALA A:177 , ALA A:178 , SER A:181 , PRO A:220 , HIS A:266 , TRP A:269 , VAL A:303 , ALA A:304 , ASN A:305 , TRP A:367 , LYS A:395 , GLU A:399 , ASP A:401 , HOH A:2072 , HOH A:2079 , HOH A:2183 , HOH A:2184 , HOH A:2258
BINDING SITE FOR CHAIN A OF POLYSACCHARIDE RESIDUES 600 TO 602
11
BC4
SOFTWARE
GLN A:319 , SER B:106 , SER B:110 , GLN B:281 , HIS B:340
BINDING SITE FOR MONO-SACCHARIDE MAN B 507 BOUND TO SER B 110
12
BC5
SOFTWARE
ALA A:322 , HOH A:2208 , SER B:115 , GLN B:432
BINDING SITE FOR MONO-SACCHARIDE MAN B 508 BOUND TO SER B 115
13
BC6
SOFTWARE
ARG A:153 , THR A:154 , LYS A:157 , GLY B:118 , THR B:122
BINDING SITE FOR MONO-SACCHARIDE MAN B 509 BOUND TO THR B 122
14
BC8
SOFTWARE
ASP A:405 , SER A:406 , ASN B:310 , HOH B:2172 , HOH B:2174
BINDING SITE FOR MONO-SACCHARIDE NAG B 502 BOUND TO ASN B 310
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: GLYCOSYL_HYDROL_F6_1 (A:167-183)
2: GLYCOSYL_HYDROL_F6_2 (A:215-224)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLYCOSYL_HYDROL_F6_1
PS00655
Glycosyl hydrolases family 6 signature 1.
GUX2_HYPJE
191-207
1
A:167-183
-
2
GLYCOSYL_HYDROL_F6_2
PS00656
Glycosyl hydrolases family 6 signature 2.
GUX2_HYPJE
239-248
1
A:215-224
-
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4ax6a_ (A:)
1b: SCOP_d4ax6b_ (B:)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
7-stranded beta/alpha barrel
(137)
Superfamily
:
Glycosyl hydrolases family 6, cellulases
(42)
Family
:
Glycosyl hydrolases family 6, cellulases
(34)
Protein domain
:
automated matches
(8)
Trichoderma reesei [TaxId: 51453]
(2)
1a
d4ax6a_
A:
1b
d4ax6b_
B:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Sorry, no Info available
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
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ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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Asym.Unit (130 KB)
Header - Asym.Unit
Biol.Unit 1 (64 KB)
Header - Biol.Unit 1
Biol.Unit 2 (63 KB)
Header - Biol.Unit 2
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