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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'PROSITE' information from database.
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Getting 'Exon' information from database.
4AWN
Asym. Unit
Info
Asym.Unit (54 KB)
Biol.Unit 1 (49 KB)
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(1)
Title
:
STRUCTURE OF RECOMBINANT HUMAN DNASE I (RHDNASEI) IN COMPLEX WITH MAGNESIUM AND PHOSPHATE.
Authors
:
G. Parsiegla, C. Noguere, L. Santell, R. A. Lazarus, Y. Bourne
Date
:
04 Jun 12 (Deposition) - 09 Jan 13 (Release) - 23 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase, Endonuclease, Pulmozyme
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Parsiegla, C. Noguere, L. Santell, R. A. Lazarus, Y. Bourne
The Structure Of Human Dnase I Bound To Magnesium And Phosphate Ions Points To A Catalytic Mechanism Common To Members Of The Dnase I-Like Superfamily.
Biochemistry V. 51 10250 2012
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Hetero Components
(5, 8)
Info
All Hetero Components
1a: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-... (BTBa)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: MAGNESIUM ION (MGa)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5a: PHOSPHATE ION (PO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BTB
1
Ligand/Ion
2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
2
CA
2
Ligand/Ion
CALCIUM ION
3
MG
1
Ligand/Ion
MAGNESIUM ION
4
NAG
3
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
PO4
1
Ligand/Ion
PHOSPHATE ION
[
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:99 , ASP A:107 , PHE A:109 , GLU A:112 , HOH A:2100 , HOH A:2101
BINDING SITE FOR RESIDUE CA A 300
2
AC2
SOFTWARE
ASP A:201 , THR A:203 , THR A:205 , THR A:207 , HOH A:2169 , HOH A:2170
BINDING SITE FOR RESIDUE CA A 301
3
AC3
SOFTWARE
GLU A:39 , PO4 A:310 , HOH A:2005 , HOH A:2033 , HOH A:2035 , HOH A:2202
BINDING SITE FOR RESIDUE MG A 302
4
AC4
SOFTWARE
ASN A:7 , GLU A:39 , HIS A:134 , ASP A:168 , ASN A:170 , HIS A:252 , MG A:302 , HOH A:2005 , HOH A:2035 , HOH A:2142 , HOH A:2202 , HOH A:2205
BINDING SITE FOR RESIDUE PO4 A 310
5
AC5
SOFTWARE
GLN A:9 , TRP A:187 , THR A:188 , SER A:189 , PRO A:190 , HOH A:2142 , HOH A:2151 , HOH A:2159 , HOH A:2202 , HOH A:2206
BINDING SITE FOR RESIDUE BTB A 315
6
AC6
SOFTWARE
ASN A:18 , GLN A:244 , ALA A:248 , HOH A:2018 , HOH A:2207 , HOH A:2208
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 18 RESIDUES 1261 TO 1262
7
AC7
SOFTWARE
CYS A:104 , ASN A:106
BINDING SITE FOR MONO-SACCHARIDE NAG A1263 BOUND TO ASN A 106
[
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SAPs(SNPs)/Variants
(10, 10)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_002264 (Q9E, chain A, )
02: VAR_029172 (R85G, chain A, )
03: VAR_009300 (V92M, chain A, )
04: VAR_024435 (G105R, chain A, )
05: VAR_002265 (P132A, chain A, )
06: VAR_009301 (R185C, chain A, )
07: VAR_029173 (C209Y, chain A, )
08: VAR_002266 (R222Q, chain A, )
09: VAR_029174 (A224P, chain A, )
10: VAR_029175 (G240D, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_002264
Q
31
E
DNAS1_HUMAN
Polymorphism
77254040
A
Q
9
E
02
UniProt
VAR_029172
R
107
G
DNAS1_HUMAN
Polymorphism
8176928
A
R
85
G
03
UniProt
VAR_009300
V
114
M
DNAS1_HUMAN
Polymorphism
---
A
V
92
M
04
UniProt
VAR_024435
G
127
R
DNAS1_HUMAN
Polymorphism
8176919
A
G
105
R
05
UniProt
VAR_002265
P
154
A
DNAS1_HUMAN
Polymorphism
1799891
A
P
132
A
06
UniProt
VAR_009301
R
207
C
DNAS1_HUMAN
Polymorphism
148373909
A
R
185
C
07
UniProt
VAR_029173
C
231
Y
DNAS1_HUMAN
Polymorphism
8176940
A
C
209
Y
08
UniProt
VAR_002266
R
244
Q
DNAS1_HUMAN
Polymorphism
1053874
A
R
222
Q
09
UniProt
VAR_029174
A
246
P
DNAS1_HUMAN
Polymorphism
8176939
A
A
224
P
10
UniProt
VAR_029175
G
262
D
DNAS1_HUMAN
Polymorphism
8176924
A
G
240
D
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: DNASE_I_1 (A:130-150)
2: DNASE_I_2 (A:167-174)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DNASE_I_1
PS00919
Deoxyribonuclease I signature 1.
DNAS1_HUMAN
152-172
1
A:130-150
2
DNASE_I_2
PS00918
Deoxyribonuclease I signature 2.
DNAS1_HUMAN
189-196
1
A:167-174
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d4awna_ (A:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
DNase I-like
(70)
Superfamily
:
DNase I-like
(70)
Family
:
DNase I-like
(31)
Protein domain
:
automated matches
(7)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d4awna_
A:
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Protein & NOT Variant
Protein & NOT Site
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Chain A
Asymmetric Unit 1
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Asym.Unit (54 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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