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4AWL
Asym. Unit
Info
Asym.Unit (127 KB)
Biol.Unit 1 (120 KB)
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(1)
Title
:
THE NF-Y TRANSCRIPTION FACTOR IS STRUCTURALLY AND FUNCTIONALLY A SEQUENCE SPECIFIC HISTONE
Authors
:
M. Nardini, N. Gnesutta, G. Donati, R. Gatta, C. Forni, A. Fossati, C. Vo D. Moras, C. Romier, R. Mantovani, M. Bolognesi
Date
:
04 Jun 12 (Deposition) - 30 Jan 13 (Release) - 30 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.08
Chains
:
Asym. Unit : A,B,C,I,J
Biol. Unit 1: A,B,C,I,J (1x)
Keywords
:
Transcription-Dna Complex, Nf-Y, Dna-Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Nardini, N. Gnesutta, G. Donati, R. Gatta, C. Forni, A. Fossati, C. Vonrhein, D. Moras, C. Romier, M. Bolognesi, R. Mantovani
Sequence-Specific Transcription Factor Nf-Y Displays Histone-Like Dna Binding And H2B-Like Ubiquitination.
Cell(Cambridge, Mass. ) V. 152 132 2013
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Hetero Components
(0, 0)
Info
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: NFYB_HAP3 (B:87-103)
2: NFYA_HAP2_2 (A:233-292)
3: NFYA_HAP2_1 (A:237-257)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NFYB_HAP3
PS00685
NF-YB/HAP3 subunit signature.
NFYB_HUMAN
89-105
1
B:87-103
2
NFYA_HAP2_2
PS51152
NF-YA/HAP2 family profile.
NFYA_HUMAN
261-321
1
A:233-292
3
NFYA_HAP2_1
PS00686
NF-YA/HAP2 subunit signature.
NFYA_HUMAN
266-286
1
A:237-257
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Exons
(5, 5)
Info
All Exons
Exon 1.4 (B:50-75)
Exon 1.5 (B:76-141)
Exon 2.14b (C:40-59)
Exon 2.15b (C:60-97)
Exon 2.16b (C:98-119)
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1: Boundary 1.3/1.4
2: Boundary 1.4/1.5
3: Boundary 1.5/1.6
4: Boundary 2.13c/2.14b
5: Boundary 2.14b/2.15b
6: Boundary 2.15b/2.16b
7: Boundary 2.16b/2.17b
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000240055
1
ENSE00001193640
chr12:
104532040-104531919
122
NFYB_HUMAN
-
0
0
-
-
1.2
ENST00000240055
2
ENSE00001193633
chr12:
104529310-104529226
85
NFYB_HUMAN
1-2
2
0
-
-
1.3
ENST00000240055
3
ENSE00000922958
chr12:
104522295-104522202
94
NFYB_HUMAN
3-34
32
0
-
-
1.4
ENST00000240055
4
ENSE00000922957
chr12:
104520022-104519892
131
NFYB_HUMAN
34-77
44
1
B:50-75
26
1.5
ENST00000240055
5
ENSE00000937932
chr12:
104517201-104517004
198
NFYB_HUMAN
78-143
66
1
B:76-141
66
1.6
ENST00000240055
6
ENSE00000937933
chr12:
104515099-104515018
82
NFYB_HUMAN
144-171
28
0
-
-
1.7
ENST00000240055
7
ENSE00001104711
chr12:
104514257-104514178
80
NFYB_HUMAN
171-197
27
0
-
-
1.8
ENST00000240055
8
ENSE00001104713
chr12:
104513547-104510858
2690
NFYB_HUMAN
198-207
10
0
-
-
2.13c
ENST00000308733
13c
ENSE00001428593
chr1:
41204510-41204620
111
NFYC_HUMAN
1-35
35
0
-
-
2.14b
ENST00000308733
14b
ENSE00001643321
chr1:
41213206-41213277
72
NFYC_HUMAN
36-59
24
1
C:40-59
20
2.15b
ENST00000308733
15b
ENSE00001609714
chr1:
41215245-41215358
114
NFYC_HUMAN
60-97
38
1
C:60-97
38
2.16b
ENST00000308733
16b
ENSE00002187131
chr1:
41218823-41218918
96
NFYC_HUMAN
98-129
32
1
C:98-119
22
2.17b
ENST00000308733
17b
ENSE00001145012
chr1:
41223793-41223966
174
NFYC_HUMAN
130-187
58
0
-
-
2.18b
ENST00000308733
18b
ENSE00000870110
chr1:
41228560-41228718
159
NFYC_HUMAN
188-240
53
0
-
-
2.21d
ENST00000308733
21d
ENSE00001662239
chr1:
41232268-41232375
108
NFYC_HUMAN
241-276
36
0
-
-
2.21h
ENST00000308733
21h
ENSE00001080407
chr1:
41232590-41232646
57
NFYC_HUMAN
277-295
19
0
-
-
2.22c
ENST00000308733
22c
ENSE00001683645
chr1:
41235028-41235087
60
NFYC_HUMAN
296-315
20
0
-
-
2.23d
ENST00000308733
23d
ENSE00001433396
chr1:
41236069-41237275
1207
NFYC_HUMAN
316-458
143
0
-
-
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