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4AVX
Asym. Unit
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Asym.Unit (82 KB)
Biol.Unit 1 (77 KB)
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(1)
Title
:
HEPATOCYTE GROWTH FACTOR-REGULATED TYROSINE KINASE SUBSTRATE (HGS-HRS) BOUND TO AN IP2 COMPOUND AT 1.68 A RESOLUTION
Authors
:
E. Williams, P. Canning, L. Shrestha, T. Krojer, M. Vollmar, A. Slowey, F. Von Delft, C. H. Arrowsmith, A. M. Edwards, J. Weigelt, C. Bountra, A. Bullock
Date
:
30 May 12 (Deposition) - 13 Jun 12 (Release) - 13 Jun 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.68
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Signaling Protein, Structural Genomics Consortium, Sgc, Signaling
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Williams, P. Canning, L. Shrestha, T. Krojer, M. Vollmar, A. Slowey S. Conway, F. Von Delft, C. H. Arrowsmith, A. M. Edwards, J. Weigelt, C. Bountra, A. Bullock
Crystal Structure Of The Tandem Vhs And Fyve Domains Of Hepatocyte Growth Factor-Regulated Tyrosine Kinase Substrate (Hgs-Hrs) Bound To An Ip2 Compound At 1. 68 A Resolution
To Be Published
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Hetero Components
(3, 11)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
2a: PHOSPHORIC ACID MONO-(2,3,4,6-TETR... (ITPa)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
8
Ligand/Ion
1,2-ETHANEDIOL
2
ITP
1
Ligand/Ion
PHOSPHORIC ACID MONO-(2,3,4,6-TETRAHYDROXY-5-PHOSPHONOOXY-CYCLOHEXYL) ESTER
3
ZN
2
Ligand/Ion
ZINC ION
[
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:162 , ALA A:163 , GLU A:164 , LYS A:179
BINDING SITE FOR RESIDUE EDO A1224
02
AC2
SOFTWARE
CYS A:182 , CYS A:185 , CYS A:212 , CYS A:215
BINDING SITE FOR RESIDUE ZN A1225
03
AC3
SOFTWARE
CYS A:166 , CYS A:169 , CYS A:190 , CYS A:193
BINDING SITE FOR RESIDUE ZN A1226
04
AC4
SOFTWARE
TRP A:160 , ARG A:178 , LYS A:179 , HIS A:180 , HIS A:181 , ARG A:183 , ARG A:210 , EDO A:1233 , HOH A:2127 , HOH A:2128 , HOH A:2129 , HOH A:2133 , HOH A:2144 , HOH A:2145 , HOH A:2147 , HOH A:2148
BINDING SITE FOR RESIDUE ITP A1227
05
AC5
SOFTWARE
VAL A:102 , ARG A:105 , ASN A:106 , EDO A:1232
BINDING SITE FOR RESIDUE EDO A1228
06
AC6
SOFTWARE
PRO A:214 , CYS A:215
BINDING SITE FOR RESIDUE EDO A1229
07
AC7
SOFTWARE
LYS A:50 , ASN A:54 , GLU A:91 , HOH A:2044
BINDING SITE FOR RESIDUE EDO A1230
08
AC8
SOFTWARE
GLN A:18
BINDING SITE FOR RESIDUE EDO A1231
09
AC9
SOFTWARE
ARG A:105 , LEU A:109 , GLY A:139 , HIS A:140 , VAL A:141 , EDO A:1228
BINDING SITE FOR RESIDUE EDO A1232
10
BC1
SOFTWARE
ASP A:162 , LYS A:179 , HIS A:181 , ILE A:188 , GLU A:217 , ITP A:1227
BINDING SITE FOR RESIDUE EDO A1233
11
BC2
SOFTWARE
GLN A:41 , TYR A:44
BINDING SITE FOR RESIDUE EDO A1234
[
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]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_054154 (T7S, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_054154
T
7
S
HGS_HUMAN
Polymorphism
---
A
T
7
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: VHS (A:15-143)
2: ZF_FYVE (A:160-220)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
VHS
PS50179
VHS domain profile.
HGS_HUMAN
15-143
1
A:15-143
2
ZF_FYVE
PS50178
Zinc finger FYVE/FYVE-related type profile.
HGS_HUMAN
160-220
1
A:160-220
[
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Exons
(9, 9)
Info
All Exons
Exon 1.1a (A:6-13)
Exon 1.2 (A:13-41)
Exon 1.3 (A:41-66)
Exon 1.4 (A:67-97)
Exon 1.5 (A:98-139)
Exon 1.6 (A:139-156)
Exon 1.7 (A:157-179)
Exon 1.8 (A:180-221)
Exon 1.9 (A:221-223)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.9
10: Boundary 1.9/1.10
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000329138
1a
ENSE00001391303
chr17:
79651020-79651133
114
HGS_HUMAN
1-13
13
1
A:6-13
8
1.2
ENST00000329138
2
ENSE00001308807
chr17:
79652635-79652719
85
HGS_HUMAN
13-41
29
1
A:13-41
29
1.3
ENST00000329138
3
ENSE00001325636
chr17:
79653342-79653417
76
HGS_HUMAN
41-66
26
1
A:41-66
26
1.4
ENST00000329138
4
ENSE00001314149
chr17:
79654033-79654125
93
HGS_HUMAN
67-97
31
1
A:67-97
31
1.5
ENST00000329138
5
ENSE00001296740
chr17:
79655734-79655857
124
HGS_HUMAN
98-139
42
1
A:98-139
42
1.6
ENST00000329138
6
ENSE00001316542
chr17:
79657212-79657264
53
HGS_HUMAN
139-156
18
1
A:139-156
18
1.7
ENST00000329138
7
ENSE00001292653
chr17:
79657704-79657772
69
HGS_HUMAN
157-179
23
1
A:157-179
23
1.8
ENST00000329138
8
ENSE00001306492
chr17:
79658477-79658601
125
HGS_HUMAN
180-221
42
1
A:180-221
42
1.9
ENST00000329138
9
ENSE00001296588
chr17:
79660533-79660611
79
HGS_HUMAN
221-247
27
1
A:221-223
3
1.10
ENST00000329138
10
ENSE00001313160
chr17:
79660684-79660782
99
HGS_HUMAN
248-280
33
0
-
-
1.11
ENST00000329138
11
ENSE00001292556
chr17:
79660900-79660995
96
HGS_HUMAN
281-312
32
0
-
-
1.12
ENST00000329138
12
ENSE00001314367
chr17:
79661845-79661883
39
HGS_HUMAN
313-325
13
0
-
-
1.13
ENST00000329138
13
ENSE00001303643
chr17:
79661954-79662097
144
HGS_HUMAN
326-373
48
0
-
-
1.14
ENST00000329138
14
ENSE00001321161
chr17:
79662194-79662253
60
HGS_HUMAN
374-393
20
0
-
-
1.15
ENST00000329138
15
ENSE00001299855
chr17:
79662816-79663029
214
HGS_HUMAN
394-465
72
0
-
-
1.16b
ENST00000329138
16b
ENSE00001299623
chr17:
79663387-79663559
173
HGS_HUMAN
465-522
58
0
-
-
1.17
ENST00000329138
17
ENSE00001301435
chr17:
79663637-79663777
141
HGS_HUMAN
523-569
47
0
-
-
1.18a
ENST00000329138
18a
ENSE00001421749
chr17:
79663854-79664028
175
HGS_HUMAN
570-628
59
0
-
-
1.19
ENST00000329138
19
ENSE00001300174
chr17:
79667497-79667630
134
HGS_HUMAN
628-672
45
0
-
-
1.20
ENST00000329138
20
ENSE00001320441
chr17:
79667725-79667844
120
HGS_HUMAN
673-712
40
0
-
-
1.21
ENST00000329138
21
ENSE00001296545
chr17:
79668075-79668161
87
HGS_HUMAN
713-741
29
0
-
-
1.22a
ENST00000329138
22a
ENSE00001319441
chr17:
79668538-79669143
606
HGS_HUMAN
742-777
36
0
-
-
[
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]
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d4avxa1 (A:6-147)
2a: SCOP_d4avxa2 (A:148-223)
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Protein Domains
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Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
ENTH/VHS domain
(36)
Family
:
automated matches
(8)
Protein domain
:
automated matches
(8)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d4avxa1
A:6-147
Class
:
Small proteins
(3458)
Fold
:
FYVE/PHD zinc finger
(57)
Superfamily
:
FYVE/PHD zinc finger
(57)
Family
:
automated matches
(18)
Protein domain
:
automated matches
(18)
Human (Homo sapiens) [TaxId: 9606]
(16)
2a
d4avxa2
A:148-223
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Solvent
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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Asym.Unit (82 KB)
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