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4AU7
Asym. Unit
Info
Asym.Unit (165 KB)
Biol.Unit 1 (88 KB)
Biol.Unit 2 (73 KB)
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(1)
Title
:
THE STRUCTURE OF THE SUV4-20H2 TERNARY COMPLEX WITH HISTONE H4
Authors
:
S. M. Southall, N. B. Cronin, J. R. Wilson
Date
:
14 May 12 (Deposition) - 22 May 13 (Release) - 15 Jan 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.07
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B (1x)
Keywords
:
Transferase, Epigenetics
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. M. Southall, N. B. Cronin, J. R. Wilson
A Novel Route To Product Specificity In The Suv4-20 Family Of Histone H4K20 Methyltransferases.
Nucleic Acids Res. V. 42 661 2014
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Hetero Components
(4, 21)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
2a: N-DIMETHYL-LYSINE (MLYa)
3a: S-ADENOSYL-L-HOMOCYSTEINE (SAHa)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
16
Ligand/Ion
1,2-ETHANEDIOL
2
MLY
1
Mod. Amino Acid
N-DIMETHYL-LYSINE
3
SAH
1
Ligand/Ion
S-ADENOSYL-L-HOMOCYSTEINE
4
ZN
3
Ligand/Ion
ZINC ION
[
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:32 , TYR A:114 , GLU A:117 , GLY A:120 , ALA A:121 , PHE A:160 , ALA A:179 , ASN A:182 , HIS A:183 , TYR A:217 , PHE A:222 , CYS A:229 , GLU A:230 , CYS A:231 , EDO A:1251 , HOH A:2015 , HOH A:2053 , MLY C:20
BINDING SITE FOR RESIDUE SAH A1247
02
AC2
SOFTWARE
CYS A:185 , CYS A:229 , CYS A:231 , CYS A:234
BINDING SITE FOR RESIDUE ZN A1248
03
AC3
SOFTWARE
HIS A:92 , CYS A:95 , CYS A:141 , HOH A:2033
BINDING SITE FOR RESIDUE ZN A1249
04
AC4
SOFTWARE
ALA A:99 , PHE A:100 , LEU A:101 , PRO A:102 , SER A:104 , GLY A:105 , PHE A:106 , THR A:126 , EDO A:1257
BINDING SITE FOR RESIDUE EDO A1250
05
AC5
SOFTWARE
TYR A:114 , SER A:115 , MET A:116 , GLU A:230 , SAH A:1247
BINDING SITE FOR RESIDUE EDO A1251
06
AC6
SOFTWARE
CYS A:95 , ARG A:98 , ALA A:99 , LEU A:137 , VAL A:139 , HOH A:2034
BINDING SITE FOR RESIDUE EDO A1252
07
AC7
SOFTWARE
PHE A:29 , ARG A:30 , ASN A:119 , HOH A:2013
BINDING SITE FOR RESIDUE EDO A1253
08
AC8
SOFTWARE
ASP A:24 , GLY A:28 , PHE A:29 , ARG A:30 , GLN A:45 , HOH A:2012
BINDING SITE FOR RESIDUE EDO A1254
09
AC9
SOFTWARE
GLU A:150 , LEU A:153 , ARG C:19
BINDING SITE FOR RESIDUE EDO A1255
10
BC1
SOFTWARE
THR A:91 , ARG A:98 , HOH A:2031 , HOH A:2032
BINDING SITE FOR RESIDUE EDO A1256
11
BC2
SOFTWARE
PRO A:102 , GLY A:105 , THR A:126 , ARG A:127 , EDO A:1250 , HOH A:2036
BINDING SITE FOR RESIDUE EDO A1257
12
BC3
SOFTWARE
CYS B:185
BINDING SITE FOR RESIDUE ZN B1219
13
BC4
SOFTWARE
ASP B:16 , VAL B:36 , SER B:37 , PRO B:38 , TYR B:77
BINDING SITE FOR RESIDUE EDO B1220
14
BC5
SOFTWARE
LEU B:42 , ARG B:43 , GLN B:45 , LEU B:48 , HOH B:2004
BINDING SITE FOR RESIDUE EDO B1221
15
BC6
SOFTWARE
TYR B:26 , ARG B:49 , ARG B:59 , LEU B:101
BINDING SITE FOR RESIDUE EDO B1222
16
BC7
SOFTWARE
PRO B:187 , CYS B:189 , LYS B:190 , PHE B:191 , CYS B:215 , PHE B:216
BINDING SITE FOR RESIDUE EDO B1223
17
BC8
SOFTWARE
HIS B:46 , ARG B:49 , SER B:50 , GLU B:103 , SER B:104 , PHE B:106 , TRP B:129 , LEU B:135 , GLU B:136 , LEU B:137
BINDING SITE FOR RESIDUE EDO B1224
18
BC9
SOFTWARE
ASP B:60 , ALA B:63 , ARG B:66
BINDING SITE FOR RESIDUE EDO B1225
19
CC1
SOFTWARE
ASP B:60 , LEU B:61 , GLU B:62 , VAL B:124 , SER B:125 , HOH B:2020
BINDING SITE FOR RESIDUE EDO B1226
20
CC2
SOFTWARE
GLU B:117 , ALA B:121 , ASN B:182
BINDING SITE FOR RESIDUE EDO B1227
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: SET (A:104-218,B:104-218)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SET
PS50280
SET domain profile.
KMT5C_MOUSE
104-218
2
A:104-218
B:104-218
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Exons
(1, 1)
Info
All Exons
Exon 1.1 (C:17-25 (gaps))
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSMUST00000087714
1
ENSMUSE00000906044
chr13:
21826903-21827329
427
H4_MOUSE
1-124
124
1
C:17-25 (gaps)
35
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SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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Chain C
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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Show PDB file:
Asym.Unit (165 KB)
Header - Asym.Unit
Biol.Unit 1 (88 KB)
Header - Biol.Unit 1
Biol.Unit 2 (73 KB)
Header - Biol.Unit 2
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