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4AU0
Biol. Unit 1
Info
Asym.Unit (134 KB)
Biol.Unit 1 (66 KB)
Biol.Unit 2 (66 KB)
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(1)
Title
:
HYPOCREA JECORINA CEL6A D221A MUTANT SOAKED WITH 6-CHLORO-4-METHYLUMBELLIFERYL-BETA-CELLOBIOSIDE
Authors
:
M. Wu, W. Nerinckx, K. Piens, T. Ishida, H. Hansson, J. Stahlberg, M. San
Date
:
11 May 12 (Deposition) - 23 Jan 13 (Release) - 23 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase, Hydrolase(O-Glycosyl), Glycosidase, Glycoside Hydrolase, Gh6, Clmufg2, Cellulase, Glycoprotein, Fluorogenic Substrate
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Wu, W. Nerinckx, K. Piens, T. Ishida, H. Hansson, M. Sandgren, J. Stahlberg
Rational Design, Synthesis, Evaluation And Enzyme-Substrate Structures Of Improved Fluorogenic Substrates For Family 6 Glycoside Hydrolases.
Febs J. V. 280 184 2013
[
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Hetero Components
(4, 13)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
1b: BETA-D-GLUCOSE (BGCb)
1c: BETA-D-GLUCOSE (BGCc)
1d: BETA-D-GLUCOSE (BGCd)
1e: BETA-D-GLUCOSE (BGCe)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
2e: ALPHA-D-MANNOSE (MANe)
2f: ALPHA-D-MANNOSE (MANf)
2g: ALPHA-D-MANNOSE (MANg)
2h: ALPHA-D-MANNOSE (MANh)
2i: ALPHA-D-MANNOSE (MANi)
2j: ALPHA-D-MANNOSE (MANj)
2k: ALPHA-D-MANNOSE (MANk)
2l: ALPHA-D-MANNOSE (MANl)
2m: ALPHA-D-MANNOSE (MANm)
2n: ALPHA-D-MANNOSE (MANn)
2o: ALPHA-D-MANNOSE (MANo)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4a: 6-CHLORO-7-HYDROXY-4-METHYL-2H-CHR... (XZZa)
4b: 6-CHLORO-7-HYDROXY-4-METHYL-2H-CHR... (XZZb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BGC
2
Ligand/Ion
BETA-D-GLUCOSE
2
MAN
8
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
XZZ
1
Ligand/Ion
6-CHLORO-7-HYDROXY-4-METHYL-2H-CHROMEN-2-ONE
[
close Hetero Component info
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Sites
(16, 16)
Info
All Sites
01: AC2 (SOFTWARE)
02: AC3 (SOFTWARE)
03: AC4 (SOFTWARE)
04: AC5 (SOFTWARE)
05: AC6 (SOFTWARE)
06: AC7 (SOFTWARE)
07: AC8 (SOFTWARE)
08: AC9 (SOFTWARE)
09: BC1 (SOFTWARE)
10: BC2 (SOFTWARE)
11: BC3 (SOFTWARE)
12: BC5 (SOFTWARE)
13: BC9 (SOFTWARE)
14: CC1 (SOFTWARE)
15: CC2 (SOFTWARE)
16: CC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC2
SOFTWARE
THR A:87 , TYR A:88 , LYS A:356 , GLY A:372 , HOH A:2231 , HOH A:2283 , HOH A:2284
BINDING SITE FOR MONO-SACCHARIDE MAN A 503 BOUND TO THR A 87
02
AC3
SOFTWARE
TYR A:88 , SER A:89 , GLY A:90 , ASN A:91 , VAL A:94 , HOH A:2011 , HOH A:2293 , HOH A:2294 , HOH A:2295 , HOH B:2047 , HOH B:2090 , HOH B:2091
BINDING SITE FOR MONO-SACCHARIDE MAN A 510 BOUND TO SER A 89
03
AC4
SOFTWARE
THR A:97 , ASN A:161 , TYR A:162
BINDING SITE FOR MONO-SACCHARIDE MAN A 504 BOUND TO THR A 97
04
AC5
SOFTWARE
TYR A:103 , SER A:106 , LEU A:111 , MAN A:507
BINDING SITE FOR MONO-SACCHARIDE MAN A 505 BOUND TO SER A 106
05
AC6
SOFTWARE
ALA A:105 , SER A:109 , ALA A:125 , ALA A:128 , LYS A:129 , HOH A:2037 , HOH A:2290 , MAN B:504
BINDING SITE FOR MONO-SACCHARIDE MAN A 506 BOUND TO SER A 109
06
AC7
SOFTWARE
SER A:106 , SER A:110 , MAN A:505 , HOH A:2291
BINDING SITE FOR MONO-SACCHARIDE MAN A 507 BOUND TO SER A 110
07
AC8
SOFTWARE
SER A:115 , GLN A:432 , HOH A:2028 , HOH A:2276 , HOH A:2292 , ALA B:322
BINDING SITE FOR MONO-SACCHARIDE MAN A 508 BOUND TO SER A 115
08
AC9
SOFTWARE
GLY A:118 , THR A:122 , ASP A:189 , ASN B:161
BINDING SITE FOR MONO-SACCHARIDE MAN A 509 BOUND TO THR A 122
09
BC1
SOFTWARE
LEU A:243 , GLU A:244 , ASN A:247 , ASN A:289 , HOH A:2145 , HOH A:2152
BINDING SITE FOR MONO-SACCHARIDE NAG A 501 BOUND TO ASN A 289
10
BC2
SOFTWARE
TRP A:309 , ASN A:310 , THR A:312 , HOH A:2190 , HOH A:2193 , GLN B:204 , ASP B:405 , SER B:406 , HOH B:2235
BINDING SITE FOR MONO-SACCHARIDE NAG A 502 BOUND TO ASN A 310
11
BC3
SOFTWARE
ASP A:175 , ASN A:229 , HIS A:266 , GLY A:268 , TRP A:269 , TRP A:272 , ASN A:305 , GLN A:363 , TRP A:364 , GLY A:365 , TRP A:367 , HOH A:2086 , HOH A:2087 , HOH A:2089 , HOH A:2162 , HOH A:2181 , HOH A:2182 , HOH A:2186 , HOH A:2297 , LEU B:230 , GLY B:231 , PRO B:233 , ALA B:236
BINDING SITE FOR CHAIN A OF POLYSACCHARIDE RESIDUES 600 TO 602
12
BC5
SOFTWARE
MAN A:506 , VAL B:96 , THR B:97 , GLY B:160 , ASN B:161 , TYR B:162
BINDING SITE FOR MONO-SACCHARIDE MAN B 504 BOUND TO THR B 97
13
BC9
SOFTWARE
ALA A:322 , SER B:115 , GLN B:432 , HOH B:2028 , HOH B:2269 , HOH B:2270
BINDING SITE FOR MONO-SACCHARIDE MAN B 508 BOUND TO SER B 115
14
CC1
SOFTWARE
ARG A:153 , THR A:154 , LYS A:157 , HOH A:2059 , GLY B:118 , THR B:122 , HOH B:2271
BINDING SITE FOR MONO-SACCHARIDE MAN B 509 BOUND TO THR B 122
15
CC2
SOFTWARE
GLY A:341 , LEU B:243 , VAL B:286 , ASN B:289 , HOH B:2135
BINDING SITE FOR MONO-SACCHARIDE NAG B 501 BOUND TO ASN B 289
16
CC3
SOFTWARE
ASP A:405 , SER A:406 , TRP B:309 , ASN B:310 , THR B:312 , HOH B:2170 , HOH B:2171
BINDING SITE FOR MONO-SACCHARIDE NAG B 502 BOUND TO ASN B 310
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: GLYCOSYL_HYDROL_F6_1 (A:167-183)
2: GLYCOSYL_HYDROL_F6_2 (A:215-224)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLYCOSYL_HYDROL_F6_1
PS00655
Glycosyl hydrolases family 6 signature 1.
GUX2_HYPJE
191-207
1
A:167-183
-
2
GLYCOSYL_HYDROL_F6_2
PS00656
Glycosyl hydrolases family 6 signature 2.
GUX2_HYPJE
239-248
1
A:215-224
-
[
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]
Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4au0a_ (A:)
1b: SCOP_d4au0b_ (B:)
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Classes
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(
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
7-stranded beta/alpha barrel
(137)
Superfamily
:
Glycosyl hydrolases family 6, cellulases
(42)
Family
:
Glycosyl hydrolases family 6, cellulases
(34)
Protein domain
:
automated matches
(8)
Hypocrea jecorina [TaxId: 51453]
(1)
1a
d4au0a_
A:
1b
d4au0b_
B:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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Asym.Unit (134 KB)
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