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4ATX
Asym. Unit
Info
Asym.Unit (185 KB)
Biol.Unit 1 (179 KB)
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(1)
Title
:
RIGOR KINESIN MOTOR DOMAIN WITH AN ORDERED NECK-LINKER, DOCKED ON TUBULIN DIMER, MODELLED INTO THE 8A CRYO-EM MAP OF DOUBLECORTIN-MICROTUBULES DECORATED WITH KINESIN
Authors
:
J. S. Liu, C. R. Schubert, X. Fu, F. J. Fourniol, J. K. Jaiswal, A. Houduss C. M. Stultz, C. A. Moores, C. A. Walsh
Date
:
10 May 12 (Deposition) - 26 Sep 12 (Release) - 26 Sep 12 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
8.20
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Hydrolase, Microtubule, Neck-Linker
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. S. Liu, C. R. Schubert, X. Fu, F. J. Fourniol, J. K. Jaiswal, A. Houdusse, C. M. Stultz, C. A. Moores, C. A. Walsh
Molecular Basis For Specific Regulation Of Neuronal Kinesin- 3 Motors By Doublecortin Family Proteins.
Mol. Cell V. 47 707 2012
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
2a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
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No.
Name
Count
Type
Full Name
1
GDP
1
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
2
GTP
1
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:10 , GLN A:11 , CYS A:12 , GLN A:15 , SER A:140 , GLY A:142 , GLY A:144 , THR A:145 , GLY A:146 , ASP A:179 , ASN A:206 , TYR A:224 , ASN A:228
BINDING SITE FOR RESIDUE GDP A 600
2
AC2
SOFTWARE
LEU A:248 , LYS A:254 , GLY B:10 , GLN B:11 , ALA B:12 , GLN B:15 , ALA B:99 , ALA B:100 , ASN B:101 , SER B:140 , GLY B:143 , GLY B:144 , THR B:145 , GLY B:146 , ILE B:171 , GLU B:183 , ASN B:206 , TYR B:224 , ASN B:228
BINDING SITE FOR RESIDUE GTP B 500
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(3, 4)
Info
All PROSITE Patterns/Profiles
1: KINESIN_MOTOR_2 (C:8-325)
2: TUBULIN (A:142-148,B:142-148)
3: KINESIN_MOTOR_1 (C:225-236)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
KINESIN_MOTOR_2
PS50067
Kinesin motor domain profile.
KINH_RAT
8-325
1
C:8-325
2
TUBULIN
PS00227
Tubulin subunits alpha, beta, and gamma signature.
TBB2B_BOVIN
140-146
1
A:142-148
TBA1D_BOVIN
142-148
1
B:142-148
3
KINESIN_MOTOR_1
PS00411
Kinesin motor domain signature.
KINH_RAT
225-236
1
C:225-236
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Exons
(4, 4)
Info
All Exons
Exon 1.1 (A:2-19)
Exon 1.2 (A:20-58 (gaps))
Exon 1.3 (A:58-95)
Exon 1.4 (A:95-437 (gaps))
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1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000005346
1
ENSBTAE00000067590
chr23:
51448815-51448966
152
TBB2B_BOVIN
1-19
19
1
A:2-19
18
1.2
ENSBTAT00000005346
2
ENSBTAE00000380542
chr23:
51449714-51449822
109
TBB2B_BOVIN
20-56
37
1
A:20-58 (gaps)
39
1.3
ENSBTAT00000005346
3
ENSBTAE00000419208
chr23:
51450093-51450203
111
TBB2B_BOVIN
56-93
38
1
A:58-95
38
1.4
ENSBTAT00000005346
4
ENSBTAE00000067601
chr23:
51450543-51451603
1061
TBB2B_BOVIN
93-445
353
1
A:95-437 (gaps)
343
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Asym.Unit (185 KB)
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