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4ATU
Biol. Unit 1
Info
Asym.Unit (552 KB)
Biol.Unit 1 (541 KB)
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(1)
Title
:
HUMAN DOUBLECORTIN N-DC REPEAT PLUS LINKER, AND TUBULIN (2XRP) DOCKED INTO AN 8A CRYO-EM MAP OF DOUBLECORTIN-STABILISED MICROTUBULES RECONSTRUCTED IN ABSENCE OF KINESIN
Authors
:
J. S. Liu, C. R. Schubert, X. Fu, F. J. Fourniol, J. K. Jaiswal, A. Houduss C. M. Stultz, C. A. Moores, C. A. Walsh
Date
:
09 May 12 (Deposition) - 26 Sep 12 (Release) - 26 Sep 12 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
8.30
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I
Biol. Unit 1: A,B,C,D,E,F,G,H,I (1x)
Keywords
:
Hydrolase, Microtubule-Associated Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. S. Liu, C. R. Schubert, X. Fu, F. J. Fourniol, J. K. Jaiswal, A. Houdusse, C. M. Stultz, C. A. Moores, C. A. Walsh
Molecular Basis For Specific Regulation Of Neuronal Kinesin- 3 Motors By Doublecortin Family Proteins.
Mol. Cell V. 47 707 2012
[
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
1b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
1c: GUANOSINE-5'-DIPHOSPHATE (GDPc)
1d: GUANOSINE-5'-DIPHOSPHATE (GDPd)
2a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
2b: GUANOSINE-5'-TRIPHOSPHATE (GTPb)
2c: GUANOSINE-5'-TRIPHOSPHATE (GTPc)
2d: GUANOSINE-5'-TRIPHOSPHATE (GTPd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GDP
4
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
2
GTP
4
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
[
close Hetero Component info
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:10 , GLN A:11 , CYS A:12 , GLN A:15 , SER A:140 , GLY A:142 , GLY A:144 , THR A:145 , GLY A:146 , ASP A:179 , ASN A:206 , TYR A:224 , ASN A:228
BINDING SITE FOR RESIDUE GDP A 600
2
AC2
SOFTWARE
LEU A:248 , LYS A:254 , GLY B:10 , GLN B:11 , ALA B:12 , GLN B:15 , ALA B:99 , ALA B:100 , ASN B:101 , SER B:140 , GLY B:143 , GLY B:144 , THR B:145 , GLY B:146 , ILE B:171 , GLU B:183 , ASN B:206 , TYR B:224 , ASN B:228
BINDING SITE FOR RESIDUE GTP B 500
3
AC3
SOFTWARE
GLY C:10 , GLN C:11 , CYS C:12 , GLN C:15 , SER C:140 , GLY C:142 , GLY C:144 , THR C:145 , GLY C:146 , ASP C:179 , ASN C:206 , TYR C:224 , ASN C:228
BINDING SITE FOR RESIDUE GDP C 600
4
AC4
SOFTWARE
LEU C:248 , LYS C:254 , GLY D:10 , GLN D:11 , ALA D:12 , GLN D:15 , ALA D:99 , ALA D:100 , ASN D:101 , SER D:140 , GLY D:143 , GLY D:144 , THR D:145 , GLY D:146 , ILE D:171 , GLU D:183 , ASN D:206 , TYR D:224 , ASN D:228
BINDING SITE FOR RESIDUE GTP D 500
5
AC5
SOFTWARE
GLY E:10 , GLN E:11 , CYS E:12 , GLN E:15 , SER E:140 , GLY E:142 , GLY E:144 , THR E:145 , GLY E:146 , ASP E:179 , ASN E:206 , TYR E:224 , ASN E:228
BINDING SITE FOR RESIDUE GDP E 600
6
AC6
SOFTWARE
LEU E:248 , LYS E:254 , GLY F:10 , GLN F:11 , ALA F:12 , GLN F:15 , ALA F:99 , ALA F:100 , ASN F:101 , SER F:140 , GLY F:143 , GLY F:144 , THR F:145 , GLY F:146 , ILE F:171 , GLU F:183 , ASN F:206 , TYR F:224 , ASN F:228
BINDING SITE FOR RESIDUE GTP F 500
7
AC7
SOFTWARE
GLY G:10 , GLN G:11 , CYS G:12 , GLN G:15 , SER G:140 , GLY G:142 , GLY G:144 , THR G:145 , GLY G:146 , ASP G:179 , ASN G:206 , TYR G:224 , ASN G:228
BINDING SITE FOR RESIDUE GDP G 600
8
AC8
SOFTWARE
LEU G:248 , GLY H:10 , GLN H:11 , ALA H:12 , GLN H:15 , ALA H:99 , ALA H:100 , ASN H:101 , SER H:140 , GLY H:143 , GLY H:144 , THR H:145 , GLY H:146 , ILE H:171 , GLU H:183 , ASN H:206 , TYR H:224 , ASN H:228
BINDING SITE FOR RESIDUE GTP H 500
[
close Site info
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SAPs(SNPs)/Variants
(16, 16)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_007822 (R59H, chain I, )
02: VAR_007821 (R59L, chain I, )
03: VAR_026024 (N60D, chain I, )
04: VAR_007823 (D62N, chain I, )
05: VAR_026025 (G67E, chain I, )
06: VAR_026026 (A71S, chain I, )
07: VAR_010202 (R78H, chain I, )
08: VAR_007824 (R78L, chain I, )
09: VAR_007825 (D86H, chain I, )
10: VAR_010536 (R89G, chain I, )
11: VAR_026027 (L97R, chain I, )
12: VAR_007826 (G100A, chain I, )
13: VAR_007827 (R102S, chain I, )
14: VAR_026028 (I104T, chain I, )
15: VAR_007829 (Y125D, chain I, )
16: VAR_007828 (Y125H, chain I, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_007822
R
140
H
DCX_HUMAN
Disease (SBHX)
---
I
R
59
H
02
UniProt
VAR_007821
R
140
L
DCX_HUMAN
Disease (SBHX)
---
I
R
59
L
03
UniProt
VAR_026024
N
141
D
DCX_HUMAN
Disease (LISX1)
---
I
N
60
D
04
UniProt
VAR_007823
D
143
N
DCX_HUMAN
Disease (SBHX)
---
I
D
62
N
05
UniProt
VAR_026025
G
148
E
DCX_HUMAN
Disease (SBHX)
---
I
G
67
E
06
UniProt
VAR_026026
A
152
S
DCX_HUMAN
Disease (LISX1)
---
I
A
71
S
07
UniProt
VAR_010202
R
159
H
DCX_HUMAN
Unclassified
---
I
R
78
H
08
UniProt
VAR_007824
R
159
L
DCX_HUMAN
Disease (SBHX)
---
I
R
78
L
09
UniProt
VAR_007825
D
167
H
DCX_HUMAN
Disease (SBHX)
---
I
D
86
H
10
UniProt
VAR_010536
R
170
G
DCX_HUMAN
Disease (SBHX)
---
I
R
89
G
11
UniProt
VAR_026027
L
178
R
DCX_HUMAN
Disease (SBHX)
---
I
L
97
R
12
UniProt
VAR_007826
G
181
A
DCX_HUMAN
Disease (SBHX)
---
I
G
100
A
13
UniProt
VAR_007827
R
183
S
DCX_HUMAN
Disease (LISX1)
---
I
R
102
S
14
UniProt
VAR_026028
I
185
T
DCX_HUMAN
Disease (SBHX)
---
I
I
104
T
15
UniProt
VAR_007829
Y
206
D
DCX_HUMAN
Disease (SBHX)
---
I
Y
125
D
16
UniProt
VAR_007828
Y
206
H
DCX_HUMAN
Disease (SBHX)
---
I
Y
125
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 9)
Info
All PROSITE Patterns/Profiles
1: DC (I:53-139|-)
2: TUBULIN (A:142-148,C:142-148,E:142-148,G:14...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DC
PS50309
Doublecortin domain profile.
DCX_HUMAN
53-139
180-263
1
I:53-139
-
2
TUBULIN
PS00227
Tubulin subunits alpha, beta, and gamma signature.
TBB2B_BOVIN
140-146
4
A:142-148
C:142-148
E:142-148
G:142-148
TBA1D_BOVIN
142-148
4
B:142-148
D:142-148
F:142-148
H:142-148
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Protein & NOT Site
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Chain H
Chain I
Asymmetric Unit 1
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