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4ATQ
Biol. Unit 2
Info
Asym.Unit (786 KB)
Biol.Unit 1 (273 KB)
Biol.Unit 2 (270 KB)
Biol.Unit 3 (256 KB)
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(1)
Title
:
GABA-TRANSAMINASE A1R958 IN COMPLEX WITH EXTERNAL ALDIMINE PLP-GABA ADDUCT
Authors
:
H. Bruce, A. N. Tuan, J. Mangas Sanchez, S. Hart, J. P. Turkenburg, G. Gr
Date
:
09 May 12 (Deposition) - 10 Oct 12 (Release) - 17 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Biol. Unit 3: I,J,K,L (1x)
Keywords
:
Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Bruce, A. Nguyen Tuan, J. Mangas Sanchez, C. Leese, J. Hopwood, R. Hyde, S. Hart, J. P. Turkenburg, G. Grogan
Structures Of A Gamma-Aminobutyrate (Gaba) Transaminase From The S-Triazine-Degrading Organism Arthrobacter Aurescens Tc1 In Complex With Plp And With Its External Aldimine Plp- Gaba Adduct.
Acta Crystallogr. , Sect. F V. 68 1175 2012
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: GAMMA-AMINO-BUTANOIC ACID (ABUa)
1b: GAMMA-AMINO-BUTANOIC ACID (ABUb)
1c: GAMMA-AMINO-BUTANOIC ACID (ABUc)
1d: GAMMA-AMINO-BUTANOIC ACID (ABUd)
1e: GAMMA-AMINO-BUTANOIC ACID (ABUe)
1f: GAMMA-AMINO-BUTANOIC ACID (ABUf)
1g: GAMMA-AMINO-BUTANOIC ACID (ABUg)
1h: GAMMA-AMINO-BUTANOIC ACID (ABUh)
1i: GAMMA-AMINO-BUTANOIC ACID (ABUi)
1j: GAMMA-AMINO-BUTANOIC ACID (ABUj)
1k: GAMMA-AMINO-BUTANOIC ACID (ABUk)
1l: GAMMA-AMINO-BUTANOIC ACID (ABUl)
2a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
2b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
2c: PYRIDOXAL-5'-PHOSPHATE (PLPc)
2d: PYRIDOXAL-5'-PHOSPHATE (PLPd)
2e: PYRIDOXAL-5'-PHOSPHATE (PLPe)
2f: PYRIDOXAL-5'-PHOSPHATE (PLPf)
2g: PYRIDOXAL-5'-PHOSPHATE (PLPg)
2h: PYRIDOXAL-5'-PHOSPHATE (PLPh)
2i: PYRIDOXAL-5'-PHOSPHATE (PLPi)
2j: PYRIDOXAL-5'-PHOSPHATE (PLPj)
2k: PYRIDOXAL-5'-PHOSPHATE (PLPk)
2l: PYRIDOXAL-5'-PHOSPHATE (PLPl)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ABU
4
Ligand/Ion
GAMMA-AMINO-BUTANOIC ACID
2
PLP
4
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
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Sites
(8, 8)
Info
All Sites
1: AC9 (SOFTWARE)
2: BC1 (SOFTWARE)
3: BC2 (SOFTWARE)
4: BC3 (SOFTWARE)
5: CC1 (SOFTWARE)
6: CC2 (SOFTWARE)
7: CC3 (SOFTWARE)
8: CC4 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC9
SOFTWARE
SER E:133 , GLY E:134 , ALA E:135 , TYR E:161 , HIS E:162 , GLU E:233 , ASP E:266 , VAL E:268 , GLN E:269 , LYS E:295 , ABU E:1457 , HOH E:2064 , HOH E:2078 , HOH E:2079 , THR F:324
BINDING SITE FOR RESIDUE PLP E1456
2
BC1
SOFTWARE
TYR E:161 , ARG E:164 , GLU E:238 , LYS E:295 , PLP E:1456 , MET F:102 , GLY F:323
BINDING SITE FOR RESIDUE ABU E1457
3
BC2
SOFTWARE
THR E:324 , HOH E:2035 , SER F:133 , GLY F:134 , ALA F:135 , TYR F:161 , HIS F:162 , GLU F:233 , ASP F:266 , VAL F:268 , GLN F:269 , LYS F:295 , ABU F:1457 , HOH F:2034 , HOH F:2036 , HOH F:2056 , HOH F:2066
BINDING SITE FOR RESIDUE PLP F1456
4
BC3
SOFTWARE
GLY E:323 , THR E:324 , TYR F:161 , ARG F:164 , TYR F:178 , GLU F:238 , LYS F:295 , PLP F:1456 , HOH F:2034
BINDING SITE FOR RESIDUE ABU F1457
5
CC1
SOFTWARE
SER G:133 , GLY G:134 , ALA G:135 , TYR G:161 , HIS G:162 , GLU G:233 , ASP G:266 , GLN G:269 , LYS G:295 , ABU G:1457 , THR H:324
BINDING SITE FOR RESIDUE PLP G1456
6
CC2
SOFTWARE
TYR G:161 , ARG G:164 , TYR G:178 , GLU G:238 , LYS G:295 , PLP G:1456 , MET H:102 , THR H:324
BINDING SITE FOR RESIDUE ABU G1457
7
CC3
SOFTWARE
THR G:324 , SER H:133 , GLY H:134 , ALA H:135 , TYR H:161 , HIS H:162 , GLU H:233 , ASP H:266 , VAL H:268 , GLN H:269 , LYS H:295 , ABU H:1457
BINDING SITE FOR RESIDUE PLP H1456
8
CC4
SOFTWARE
MET G:102 , GLY G:323 , THR G:324 , TYR H:161 , ARG H:164 , GLU H:238 , LYS H:295 , PLP H:1456
BINDING SITE FOR RESIDUE ABU H1457
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d4atqa_ (A:)
1b: SCOP_d4atqb_ (B:)
1c: SCOP_d4atqc_ (C:)
1d: SCOP_d4atqd_ (D:)
1e: SCOP_d4atqe_ (E:)
1f: SCOP_d4atqf_ (F:)
1g: SCOP_d4atqg_ (G:)
1h: SCOP_d4atqh_ (H:)
1i: SCOP_d4atqi_ (I:)
1j: SCOP_d4atqj_ (J:)
1k: SCOP_d4atqk_ (K:)
1l: SCOP_d4atql_ (L:)
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Protein Domains
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
automated matches
(163)
Protein domain
:
automated matches
(163)
Arthrobacter aurescens [TaxId: 290340]
(2)
1a
d4atqa_
A:
1b
d4atqb_
B:
1c
d4atqc_
C:
1d
d4atqd_
D:
1e
d4atqe_
E:
1f
d4atqf_
F:
1g
d4atqg_
G:
1h
d4atqh_
H:
1i
d4atqi_
I:
1j
d4atqj_
J:
1k
d4atqk_
K:
1l
d4atql_
L:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (786 KB)
Header - Asym.Unit
Biol.Unit 1 (273 KB)
Header - Biol.Unit 1
Biol.Unit 2 (270 KB)
Header - Biol.Unit 2
Biol.Unit 3 (256 KB)
Header - Biol.Unit 3
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