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4ATQ
Asym. Unit
Info
Asym.Unit (786 KB)
Biol.Unit 1 (273 KB)
Biol.Unit 2 (270 KB)
Biol.Unit 3 (256 KB)
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(1)
Title
:
GABA-TRANSAMINASE A1R958 IN COMPLEX WITH EXTERNAL ALDIMINE PLP-GABA ADDUCT
Authors
:
H. Bruce, A. N. Tuan, J. Mangas Sanchez, S. Hart, J. P. Turkenburg, G. Gr
Date
:
09 May 12 (Deposition) - 10 Oct 12 (Release) - 17 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Biol. Unit 3: I,J,K,L (1x)
Keywords
:
Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Bruce, A. Nguyen Tuan, J. Mangas Sanchez, C. Leese, J. Hopwood, R. Hyde, S. Hart, J. P. Turkenburg, G. Grogan
Structures Of A Gamma-Aminobutyrate (Gaba) Transaminase From The S-Triazine-Degrading Organism Arthrobacter Aurescens Tc1 In Complex With Plp And With Its External Aldimine Plp- Gaba Adduct.
Acta Crystallogr. , Sect. F V. 68 1175 2012
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Hetero Components
(2, 24)
Info
All Hetero Components
1a: GAMMA-AMINO-BUTANOIC ACID (ABUa)
1b: GAMMA-AMINO-BUTANOIC ACID (ABUb)
1c: GAMMA-AMINO-BUTANOIC ACID (ABUc)
1d: GAMMA-AMINO-BUTANOIC ACID (ABUd)
1e: GAMMA-AMINO-BUTANOIC ACID (ABUe)
1f: GAMMA-AMINO-BUTANOIC ACID (ABUf)
1g: GAMMA-AMINO-BUTANOIC ACID (ABUg)
1h: GAMMA-AMINO-BUTANOIC ACID (ABUh)
1i: GAMMA-AMINO-BUTANOIC ACID (ABUi)
1j: GAMMA-AMINO-BUTANOIC ACID (ABUj)
1k: GAMMA-AMINO-BUTANOIC ACID (ABUk)
1l: GAMMA-AMINO-BUTANOIC ACID (ABUl)
2a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
2b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
2c: PYRIDOXAL-5'-PHOSPHATE (PLPc)
2d: PYRIDOXAL-5'-PHOSPHATE (PLPd)
2e: PYRIDOXAL-5'-PHOSPHATE (PLPe)
2f: PYRIDOXAL-5'-PHOSPHATE (PLPf)
2g: PYRIDOXAL-5'-PHOSPHATE (PLPg)
2h: PYRIDOXAL-5'-PHOSPHATE (PLPh)
2i: PYRIDOXAL-5'-PHOSPHATE (PLPi)
2j: PYRIDOXAL-5'-PHOSPHATE (PLPj)
2k: PYRIDOXAL-5'-PHOSPHATE (PLPk)
2l: PYRIDOXAL-5'-PHOSPHATE (PLPl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ABU
12
Ligand/Ion
GAMMA-AMINO-BUTANOIC ACID
2
PLP
12
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
[
close Hetero Component info
]
Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:133 , GLY A:134 , ALA A:135 , TYR A:161 , HIS A:162 , GLU A:233 , ASP A:266 , VAL A:268 , GLN A:269 , LYS A:295 , ABU A:1457 , HOH A:2057 , HOH A:2076 , THR B:324
BINDING SITE FOR RESIDUE PLP A1456
02
AC2
SOFTWARE
TYR A:161 , ARG A:164 , GLU A:238 , LYS A:295 , PLP A:1456 , HOH A:2057 , MET B:102 , GLY B:323 , THR B:324
BINDING SITE FOR RESIDUE ABU A1457
03
AC3
SOFTWARE
THR A:324 , HOH A:2042 , HOH A:2043 , SER B:133 , GLY B:134 , ALA B:135 , TYR B:161 , HIS B:162 , GLU B:233 , ASP B:266 , VAL B:268 , GLN B:269 , LYS B:295 , ABU B:1457 , HOH B:2077
BINDING SITE FOR RESIDUE PLP B1456
04
AC4
SOFTWARE
MET A:102 , GLY A:323 , THR A:324 , TYR B:161 , ARG B:164 , GLU B:238 , LYS B:295 , PLP B:1456
BINDING SITE FOR RESIDUE ABU B1457
05
AC5
SOFTWARE
SER C:133 , GLY C:134 , ALA C:135 , TYR C:161 , HIS C:162 , GLU C:233 , ASP C:266 , VAL C:268 , GLN C:269 , LYS C:295 , ABU C:1457 , HOH C:2033 , THR D:324
BINDING SITE FOR RESIDUE PLP C1456
06
AC6
SOFTWARE
TYR C:161 , ARG C:164 , LYS C:295 , PLP C:1456 , MET D:102 , GLY D:323 , THR D:324
BINDING SITE FOR RESIDUE ABU C1457
07
AC7
SOFTWARE
THR C:324 , SER D:133 , GLY D:134 , ALA D:135 , TYR D:161 , HIS D:162 , GLU D:233 , ASP D:266 , VAL D:268 , GLN D:269 , LYS D:295 , ABU D:1457 , HOH D:2019 , HOH D:2030
BINDING SITE FOR RESIDUE PLP D1456
08
AC8
SOFTWARE
MET C:102 , TYR D:161 , ARG D:164 , GLU D:238 , LYS D:295 , PLP D:1456 , HOH D:2019 , HOH D:2021
BINDING SITE FOR RESIDUE ABU D1457
09
AC9
SOFTWARE
SER E:133 , GLY E:134 , ALA E:135 , TYR E:161 , HIS E:162 , GLU E:233 , ASP E:266 , VAL E:268 , GLN E:269 , LYS E:295 , ABU E:1457 , HOH E:2064 , HOH E:2078 , HOH E:2079 , THR F:324
BINDING SITE FOR RESIDUE PLP E1456
10
BC1
SOFTWARE
TYR E:161 , ARG E:164 , GLU E:238 , LYS E:295 , PLP E:1456 , MET F:102 , GLY F:323
BINDING SITE FOR RESIDUE ABU E1457
11
BC2
SOFTWARE
THR E:324 , HOH E:2035 , SER F:133 , GLY F:134 , ALA F:135 , TYR F:161 , HIS F:162 , GLU F:233 , ASP F:266 , VAL F:268 , GLN F:269 , LYS F:295 , ABU F:1457 , HOH F:2034 , HOH F:2036 , HOH F:2056 , HOH F:2066
BINDING SITE FOR RESIDUE PLP F1456
12
BC3
SOFTWARE
GLY E:323 , THR E:324 , TYR F:161 , ARG F:164 , TYR F:178 , GLU F:238 , LYS F:295 , PLP F:1456 , HOH F:2034
BINDING SITE FOR RESIDUE ABU F1457
13
BC4
SOFTWARE
SER I:133 , GLY I:134 , ALA I:135 , TYR I:161 , HIS I:162 , GLU I:233 , ASP I:266 , VAL I:268 , GLN I:269 , LYS I:295 , ABU I:1458 , HOH I:2005 , THR L:324
BINDING SITE FOR RESIDUE PLP I1457
14
BC5
SOFTWARE
TYR I:161 , ARG I:164 , GLU I:238 , LYS I:295 , PLP I:1457 , MET L:102 , GLY L:323 , THR L:324
BINDING SITE FOR RESIDUE ABU I1458
15
BC6
SOFTWARE
SER J:133 , GLY J:134 , ALA J:135 , TYR J:161 , HIS J:162 , GLU J:233 , ASP J:266 , LYS J:295 , ABU J:1457 , GLY K:323 , THR K:324
BINDING SITE FOR RESIDUE PLP J1456
16
BC7
SOFTWARE
TYR J:161 , ARG J:164 , TYR J:178 , GLU J:238 , LYS J:295 , PLP J:1456 , MET K:102 , GLY K:323 , THR K:324
BINDING SITE FOR RESIDUE ABU J1457
17
BC8
SOFTWARE
THR J:324 , GLY K:134 , ALA K:135 , TYR K:161 , HIS K:162 , GLU K:233 , ASP K:266 , GLN K:269 , LYS K:295 , ABU K:1457 , HOH K:2004
BINDING SITE FOR RESIDUE PLP K1456
18
BC9
SOFTWARE
MET J:102 , GLY J:323 , THR J:324 , TYR K:161 , ARG K:164 , GLU K:238 , LYS K:295 , PLP K:1456
BINDING SITE FOR RESIDUE ABU K1457
19
CC1
SOFTWARE
SER G:133 , GLY G:134 , ALA G:135 , TYR G:161 , HIS G:162 , GLU G:233 , ASP G:266 , GLN G:269 , LYS G:295 , ABU G:1457 , THR H:324
BINDING SITE FOR RESIDUE PLP G1456
20
CC2
SOFTWARE
TYR G:161 , ARG G:164 , TYR G:178 , GLU G:238 , LYS G:295 , PLP G:1456 , MET H:102 , THR H:324
BINDING SITE FOR RESIDUE ABU G1457
21
CC3
SOFTWARE
THR G:324 , SER H:133 , GLY H:134 , ALA H:135 , TYR H:161 , HIS H:162 , GLU H:233 , ASP H:266 , VAL H:268 , GLN H:269 , LYS H:295 , ABU H:1457
BINDING SITE FOR RESIDUE PLP H1456
22
CC4
SOFTWARE
MET G:102 , GLY G:323 , THR G:324 , TYR H:161 , ARG H:164 , GLU H:238 , LYS H:295 , PLP H:1456
BINDING SITE FOR RESIDUE ABU H1457
23
CC5
SOFTWARE
THR I:324 , SER L:133 , GLY L:134 , ALA L:135 , TYR L:161 , HIS L:162 , GLU L:233 , ASP L:266 , GLN L:269 , LYS L:295 , ABU L:1457
BINDING SITE FOR RESIDUE PLP L1456
24
CC6
SOFTWARE
MET I:102 , THR I:324 , TYR L:161 , ARG L:164 , TYR L:178 , GLU L:238 , LYS L:295 , PLP L:1456
BINDING SITE FOR RESIDUE ABU L1457
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d4atqa_ (A:)
1b: SCOP_d4atqb_ (B:)
1c: SCOP_d4atqc_ (C:)
1d: SCOP_d4atqd_ (D:)
1e: SCOP_d4atqe_ (E:)
1f: SCOP_d4atqf_ (F:)
1g: SCOP_d4atqg_ (G:)
1h: SCOP_d4atqh_ (H:)
1i: SCOP_d4atqi_ (I:)
1j: SCOP_d4atqj_ (J:)
1k: SCOP_d4atqk_ (K:)
1l: SCOP_d4atql_ (L:)
View:
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Classes
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(
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
automated matches
(163)
Protein domain
:
automated matches
(163)
Arthrobacter aurescens [TaxId: 290340]
(2)
1a
d4atqa_
A:
1b
d4atqb_
B:
1c
d4atqc_
C:
1d
d4atqd_
D:
1e
d4atqe_
E:
1f
d4atqf_
F:
1g
d4atqg_
G:
1h
d4atqh_
H:
1i
d4atqi_
I:
1j
d4atqj_
J:
1k
d4atqk_
K:
1l
d4atql_
L:
[
close SCOP info
]
CATH Domains
(0, 0)
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Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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