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4ATN
Asym. Unit
Info
Asym.Unit (73 KB)
Biol.Unit 1 (67 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF C2498 2'-O-RIBOSE METHYLTRANSFERASE RLMM FROM ESCHERICHIA COLI
Authors
:
A. S. Punekar, T. R. Shepherd, J. Liljeruhm, A. C. Forster, M. Selmer
Date
:
08 May 12 (Deposition) - 15 Aug 12 (Release) - 14 Nov 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. S. Punekar, T. R. Shepherd, J. Liljeruhm, A. C. Forster, M. Selmer
Crystal Structure Of Rlmm, The 2'O-Ribose Methyltransferase For C2498 Of Escherichia Coli 23S Rrna.
Nucleic Acids Res. V. 40 10507 2012
[
close entry info
]
Hetero Components
(4, 31)
Info
All Hetero Components
1a: S-MERCAPTOCYSTEINE (CSSa)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CSS
1
Mod. Amino Acid
S-MERCAPTOCYSTEINE
2
EDO
21
Ligand/Ion
1,2-ETHANEDIOL
3
GOL
5
Ligand/Ion
GLYCEROL
4
SO4
4
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(30, 30)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:34 , LYS A:36 , TYR A:41 , VAL A:42 , ILE A:43 , HOH A:2035
BINDING SITE FOR RESIDUE GOL A1358
02
AC2
SOFTWARE
ARG A:85 , ASN A:211 , ASN A:233 , GLN A:253 , HOH A:2147 , HOH A:2189
BINDING SITE FOR RESIDUE GOL A1359
03
AC3
SOFTWARE
VAL A:96 , VAL A:97 , GLU A:98 , ARG A:145 , PRO A:146 , TYR A:164
BINDING SITE FOR RESIDUE GOL A1360
04
AC4
SOFTWARE
SER A:62 , SER A:63 , ILE A:65 , LEU A:320 , GLN A:337 , ALA A:338 , EDO A:1375 , HOH A:2026 , HOH A:2190 , HOH A:2191
BINDING SITE FOR RESIDUE GOL A1361
05
AC5
SOFTWARE
PHE A:171 , PRO A:176 , ARG A:177 , HOH A:2110
BINDING SITE FOR RESIDUE GOL A1362
06
AC6
SOFTWARE
PHE A:264 , THR A:267 , ARG A:268
BINDING SITE FOR RESIDUE EDO A1363
07
AC7
SOFTWARE
PHE A:61 , SER A:62 , ASN A:167 , EDO A:1373
BINDING SITE FOR RESIDUE EDO A1364
08
AC8
SOFTWARE
THR A:110 , ASN A:111 , GLU A:112 , PRO A:222 , PRO A:243 , HOH A:2041 , HOH A:2088 , HOH A:2150
BINDING SITE FOR RESIDUE EDO A1365
09
AC9
SOFTWARE
ASP A:109 , LYS A:114 , HOH A:2085 , HOH A:2192
BINDING SITE FOR RESIDUE EDO A1366
10
BC1
SOFTWARE
THR A:21 , PHE A:32 , ALA A:33 , HOH A:2017 , HOH A:2193
BINDING SITE FOR RESIDUE EDO A1367
11
BC2
SOFTWARE
LYS A:281 , PRO A:308 , MET A:309 , LYS A:310
BINDING SITE FOR RESIDUE EDO A1368
12
BC3
SOFTWARE
ALA A:18 , TYR A:313 , GLU A:314 , HOH A:2018
BINDING SITE FOR RESIDUE EDO A1369
13
BC4
SOFTWARE
ARG A:34 , VAL A:35 , EDO A:1371
BINDING SITE FOR RESIDUE EDO A1370
14
BC5
SOFTWARE
ARG A:34 , GLU A:259 , ASP A:260 , EDO A:1370
BINDING SITE FOR RESIDUE EDO A1371
15
BC6
SOFTWARE
GLN A:48 , PRO A:49 , ASP A:50 , ASP A:51 , HIS A:330 , HOH A:2046 , HOH A:2047
BINDING SITE FOR RESIDUE EDO A1372
16
BC7
SOFTWARE
ARG A:57 , ASN A:167 , EDO A:1364 , EDO A:1376
BINDING SITE FOR RESIDUE EDO A1373
17
BC8
SOFTWARE
ASP A:22 , HOH A:2171
BINDING SITE FOR RESIDUE EDO A1374
18
BC9
SOFTWARE
SER A:62 , SER A:63 , ILE A:336 , GOL A:1361 , HOH A:2194 , HOH A:2195
BINDING SITE FOR RESIDUE EDO A1375
19
CC1
SOFTWARE
ARG A:57 , ASN A:166 , ASN A:167 , EDO A:1373
BINDING SITE FOR RESIDUE EDO A1376
20
CC2
SOFTWARE
GLY A:91 , MET A:92 , HOH A:2065
BINDING SITE FOR RESIDUE EDO A1377
21
CC3
SOFTWARE
LYS A:99 , ARG A:132 , ASP A:133 , GLY A:135 , TYR A:140
BINDING SITE FOR RESIDUE EDO A1378
22
CC4
SOFTWARE
PRO A:82 , ARG A:85 , VAL A:230 , ASN A:233 , GLN A:253
BINDING SITE FOR RESIDUE EDO A1379
23
CC5
SOFTWARE
SER A:269 , ILE A:271 , GLY A:296 , TRP A:356
BINDING SITE FOR RESIDUE EDO A1380
24
CC6
SOFTWARE
ILE A:332 , ASN A:333 , ARG A:354 , ILE A:355
BINDING SITE FOR RESIDUE EDO A1381
25
CC7
SOFTWARE
ARG A:187 , HIS A:343 , SO4 A:1387 , HOH A:2122
BINDING SITE FOR RESIDUE EDO A1382
26
CC8
SOFTWARE
ASP A:206
BINDING SITE FOR RESIDUE EDO A1383
27
CC9
SOFTWARE
LYS A:99 , ALA A:138 , ASN A:139 , TYR A:140
BINDING SITE FOR RESIDUE SO4 A1384
28
DC1
SOFTWARE
LYS A:118 , ARG A:121 , LYS A:122 , SO4 A:1386
BINDING SITE FOR RESIDUE SO4 A1385
29
DC2
SOFTWARE
ARG A:121 , LYS A:122 , TRP A:214 , ARG A:268 , ASN A:270 , SO4 A:1385
BINDING SITE FOR RESIDUE SO4 A1386
30
DC3
SOFTWARE
ARG A:187 , SER A:188 , LYS A:191 , ARG A:345 , EDO A:1382 , HOH A:2122
BINDING SITE FOR RESIDUE SO4 A1387
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Sorry, no Info available
[
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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Atom Selection
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Protein
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Protein & NOT Site
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Chain A
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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Asym.Unit (73 KB)
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