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4ATJ
Biol. Unit 1
Info
Asym.Unit (111 KB)
Biol.Unit 1 (55 KB)
Biol.Unit 2 (55 KB)
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(1)
Title
:
DISTAL HEME POCKET MUTANT (H42E) OF RECOMBINANT HORSERADISH PEROXIDASE IN COMPLEX WITH BENZHYDROXAMIC ACID
Authors
:
K. Meno, S. Jennings, A. T. Smith, A. Henriksen, M. Gajhede
Date
:
19 Apr 99 (Deposition) - 02 Oct 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Oxidoreductase, Peroxidase, Heme Enzyme, Mutant
(Keyword Search:
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Reference
:
K. Meno, S. Jennings, A. T. Smith, A. Henriksen, M. Gajhede
Structural Analysis Of The Two Horseradish Peroxidase Catalytic Residue Variants H42E And R38S/H42E: Implications For The Catalytic Cycle.
Acta Crystallogr. , Sect. D V. 58 1803 2002
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: BENZHYDROXAMIC ACID (BHOa)
1b: BENZHYDROXAMIC ACID (BHOb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
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No.
Name
Count
Type
Full Name
1
BHO
1
Ligand/Ion
BENZHYDROXAMIC ACID
2
CA
-1
Ligand/Ion
CALCIUM ION
3
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC5 (SOFTWARE)
4: AC6 (SOFTWARE)
5: BEN (AUTHOR)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:171 , ASP A:222 , THR A:225 , ILE A:228 , ASP A:230
BINDING SITE FOR RESIDUE CA A 351
2
AC2
SOFTWARE
ASP A:43 , VAL A:46 , GLY A:48 , ASP A:50 , SER A:52
BINDING SITE FOR RESIDUE CA A 352
3
AC5
SOFTWARE
ARG A:31 , ALA A:34 , SER A:35 , LEU A:37 , ARG A:38 , PHE A:41 , SER A:73 , PRO A:139 , ALA A:140 , PRO A:141 , LEU A:166 , GLY A:169 , HIS A:170 , PHE A:172 , GLY A:173 , LYS A:174 , ASN A:175 , GLN A:176 , PHE A:179 , PHE A:221 , SER A:246 , BHO A:353 , HOH A:365 , HOH A:412 , HOH A:440 , HOH A:476
BINDING SITE FOR RESIDUE HEM A 350
4
AC6
SOFTWARE
ARG A:38 , PHE A:41 , GLU A:42 , PHE A:68 , GLY A:69 , PRO A:139 , PRO A:141 , PHE A:179 , HEM A:350 , HOH A:365
BINDING SITE FOR RESIDUE BHO A 353
5
BEN
AUTHOR
ARG A:38 , GLU A:42 , PHE A:68 , GLY A:69 , PRO A:139 , ALA A:140 , PRO A:141 , PHE A:179
BENZHYDROZAMIC ACID BINDING SITE.
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: PEROXIDASE_4 (A:1-305)
2: PEROXIDASE_2 (A:33-44)
3: PEROXIDASE_1 (A:162-172)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEROXIDASE_4
PS50873
Plant heme peroxidase family profile.
PER1A_ARMRU
31-335
1
A:1-305
-
2
PEROXIDASE_2
PS00436
Peroxidases active site signature.
PER1A_ARMRU
63-74
1
A:33-44
-
3
PEROXIDASE_1
PS00435
Peroxidases proximal heme-ligand signature.
PER1A_ARMRU
192-202
1
A:162-172
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4atja_ (A:)
1b: SCOP_d4atjb_ (B:)
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
Heme-dependent peroxidases
(402)
Superfamily
:
Heme-dependent peroxidases
(402)
Family
:
CCP-like
(292)
Protein domain
:
Plant peroxidase
(35)
Horseradish (Armoracia rusticana) [TaxId: 3704]
(29)
1a
d4atja_
A:
1b
d4atjb_
B:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_4atjA01 (A:2-138,A:285-305)
1b: CATH_4atjB01 (B:2-138,B:285-305)
2a: CATH_4atjA02 (A:139-284)
2b: CATH_4atjB02 (B:139-284)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Peroxidase; domain 1
(244)
Homologous Superfamily
:
[code=1.10.520.10, no name defined]
(241)
Armoracia rusticana. Organism_taxid: 3704.
(6)
1a
4atjA01
A:2-138,A:285-305
1b
4atjB01
B:2-138,B:285-305
Topology
:
Peroxidase; domain 2
(241)
Homologous Superfamily
:
Peroxidase, domain 2
(241)
Armoracia rusticana. Organism_taxid: 3704.
(6)
2a
4atjA02
A:139-284
2b
4atjB02
B:139-284
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (111 KB)
Header - Asym.Unit
Biol.Unit 1 (55 KB)
Header - Biol.Unit 1
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Header - Biol.Unit 2
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