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4ATJ
Asym. Unit
Info
Asym.Unit (111 KB)
Biol.Unit 1 (55 KB)
Biol.Unit 2 (55 KB)
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(1)
Title
:
DISTAL HEME POCKET MUTANT (H42E) OF RECOMBINANT HORSERADISH PEROXIDASE IN COMPLEX WITH BENZHYDROXAMIC ACID
Authors
:
K. Meno, S. Jennings, A. T. Smith, A. Henriksen, M. Gajhede
Date
:
19 Apr 99 (Deposition) - 02 Oct 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Oxidoreductase, Peroxidase, Heme Enzyme, Mutant
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Meno, S. Jennings, A. T. Smith, A. Henriksen, M. Gajhede
Structural Analysis Of The Two Horseradish Peroxidase Catalytic Residue Variants H42E And R38S/H42E: Implications For The Catalytic Cycle.
Acta Crystallogr. , Sect. D V. 58 1803 2002
(for further references see the
PDB file header
)
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: BENZHYDROXAMIC ACID (BHOa)
1b: BENZHYDROXAMIC ACID (BHOb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BHO
2
Ligand/Ion
BENZHYDROXAMIC ACID
2
CA
4
Ligand/Ion
CALCIUM ION
3
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: BEM (AUTHOR)
10: BEN (AUTHOR)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:171 , ASP A:222 , THR A:225 , ILE A:228 , ASP A:230
BINDING SITE FOR RESIDUE CA A 351
02
AC2
SOFTWARE
ASP A:43 , VAL A:46 , GLY A:48 , ASP A:50 , SER A:52
BINDING SITE FOR RESIDUE CA A 352
03
AC3
SOFTWARE
THR B:171 , ASP B:222 , THR B:225 , ILE B:228 , ASP B:230
BINDING SITE FOR RESIDUE CA B 351
04
AC4
SOFTWARE
ASP B:43 , VAL B:46 , GLY B:48 , ASP B:50 , SER B:52
BINDING SITE FOR RESIDUE CA B 352
05
AC5
SOFTWARE
ARG A:31 , ALA A:34 , SER A:35 , LEU A:37 , ARG A:38 , PHE A:41 , SER A:73 , PRO A:139 , ALA A:140 , PRO A:141 , LEU A:166 , GLY A:169 , HIS A:170 , PHE A:172 , GLY A:173 , LYS A:174 , ASN A:175 , GLN A:176 , PHE A:179 , PHE A:221 , SER A:246 , BHO A:353 , HOH A:365 , HOH A:412 , HOH A:440 , HOH A:476
BINDING SITE FOR RESIDUE HEM A 350
06
AC6
SOFTWARE
ARG A:38 , PHE A:41 , GLU A:42 , PHE A:68 , GLY A:69 , PRO A:139 , PRO A:141 , PHE A:179 , HEM A:350 , HOH A:365
BINDING SITE FOR RESIDUE BHO A 353
07
AC7
SOFTWARE
ARG B:31 , ALA B:34 , SER B:35 , LEU B:37 , ARG B:38 , PHE B:41 , SER B:73 , PRO B:139 , ALA B:140 , PRO B:141 , LEU B:166 , GLY B:169 , HIS B:170 , PHE B:172 , GLY B:173 , LYS B:174 , ASN B:175 , GLN B:176 , PHE B:179 , PHE B:221 , SER B:246 , BHO B:353 , HOH B:364 , HOH B:411 , HOH B:438 , HOH B:474
BINDING SITE FOR RESIDUE HEM B 350
08
AC8
SOFTWARE
ARG B:38 , PHE B:41 , GLU B:42 , PHE B:68 , GLY B:69 , PRO B:139 , PRO B:141 , PHE B:179 , HEM B:350 , HOH B:364
BINDING SITE FOR RESIDUE BHO B 353
09
BEM
AUTHOR
ARG B:38 , GLU B:42 , PHE B:68 , GLY B:69 , PRO B:139 , ALA B:140 , PRO B:141 , PHE B:179
BENZHYDROZAMIC ACID BINDING SITE.
10
BEN
AUTHOR
ARG A:38 , GLU A:42 , PHE A:68 , GLY A:69 , PRO A:139 , ALA A:140 , PRO A:141 , PHE A:179
BENZHYDROZAMIC ACID BINDING SITE.
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: PEROXIDASE_4 (A:1-305,B:1-305)
2: PEROXIDASE_2 (A:33-44,B:33-44)
3: PEROXIDASE_1 (A:162-172,B:162-172)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEROXIDASE_4
PS50873
Plant heme peroxidase family profile.
PER1A_ARMRU
31-335
2
A:1-305
B:1-305
2
PEROXIDASE_2
PS00436
Peroxidases active site signature.
PER1A_ARMRU
63-74
2
A:33-44
B:33-44
3
PEROXIDASE_1
PS00435
Peroxidases proximal heme-ligand signature.
PER1A_ARMRU
192-202
2
A:162-172
B:162-172
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4atja_ (A:)
1b: SCOP_d4atjb_ (B:)
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Protein Domains
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(
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Organisms
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)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Heme-dependent peroxidases
(402)
Superfamily
:
Heme-dependent peroxidases
(402)
Family
:
CCP-like
(292)
Protein domain
:
Plant peroxidase
(35)
Horseradish (Armoracia rusticana) [TaxId: 3704]
(29)
1a
d4atja_
A:
1b
d4atjb_
B:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_4atjA01 (A:2-138,A:285-305)
1b: CATH_4atjB01 (B:2-138,B:285-305)
2a: CATH_4atjA02 (A:139-284)
2b: CATH_4atjB02 (B:139-284)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Peroxidase; domain 1
(244)
Homologous Superfamily
:
[code=1.10.520.10, no name defined]
(241)
Armoracia rusticana. Organism_taxid: 3704.
(6)
1a
4atjA01
A:2-138,A:285-305
1b
4atjB01
B:2-138,B:285-305
Topology
:
Peroxidase; domain 2
(241)
Homologous Superfamily
:
Peroxidase, domain 2
(241)
Armoracia rusticana. Organism_taxid: 3704.
(6)
2a
4atjA02
A:139-284
2b
4atjB02
B:139-284
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Pfam Domains
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Asym.Unit (111 KB)
Header - Asym.Unit
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