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4ASZ
Asym. Unit
Info
Asym.Unit (61 KB)
Biol.Unit 1 (57 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF APO TRKB KINASE DOMAIN
Authors
:
T. Bertrand, M. Kothe, J. Liu, A. Dupuy, A. Rak, P. F. Berne, S. Davis, T. Gladysheva, C. Valtre, J. Y. Crenne, M. Mathieu
Date
:
03 May 12 (Deposition) - 22 Aug 12 (Release) - 10 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Transferase, Trka, Trkb
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Bertrand, M. Kothe, J. Liu, A. Dupuy, A. Rak, P. F. Berne, S. Davis, T. Gladysheva, C. Valtre, J. Y. Crenne, M. Mathieu
The Crystal Structures Of Trka And Trkb Suggest Key Regions For Achieving Selective Inhibition.
J. Mol. Biol. V. 423 439 2012
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
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]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(5, 5)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_049715 (G561V, chain A, )
2: VAR_046518 (M713I, chain A, )
3: VAR_046519 (R715G, chain A, )
4: VAR_065890 (Y722C, chain A, )
5: VAR_046520 (R734C, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_049715
G
545
V
NTRK2_HUMAN
Polymorphism
1075108
A
G
561
V
2
UniProt
VAR_046518
M
697
I
NTRK2_HUMAN
Unclassified
---
A
M
713
I
3
UniProt
VAR_046519
R
699
G
NTRK2_HUMAN
Unclassified
---
A
R
715
G
4
UniProt
VAR_065890
Y
706
C
NTRK2_HUMAN
Disease (OBHD)
---
A
Y
722
C
5
UniProt
VAR_046520
R
718
C
NTRK2_HUMAN
Unclassified
---
A
R
734
C
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:560-588)
2: PROTEIN_KINASE_TYR (A:688-700)
3: RECEPTOR_TYR_KIN_II (A:716-724)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
NTRK2_HUMAN
544-572
1
A:560-588
2
PROTEIN_KINASE_TYR
PS00109
Tyrosine protein kinases specific active-site signature.
NTRK2_HUMAN
672-684
1
A:688-700
3
RECEPTOR_TYR_KIN_II
PS00239
Receptor tyrosine kinase class II signature.
NTRK2_HUMAN
700-708
1
A:716-724
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Exons
(6, 6)
Info
All Exons
Exon 1.17 (A:1-545 (gaps))
Exon 1.19 (A:545-588 (gaps))
Exon 1.20 (A:589-646)
Exon 1.21 (A:646-724 (gaps))
Exon 1.22 (A:725-777)
Exon 1.23c (A:778-838)
View:
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Label:
All Exon Boundaries
1: Boundary 1.14/1.17
2: Boundary 1.17/1.19
3: Boundary 1.19/1.20
4: Boundary 1.20/1.21
5: Boundary 1.21/1.22
6: Boundary 1.22/1.23c
7: Boundary 1.23c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000376213
1
ENSE00001469814
chr9:
87283466-87283700
235
NTRK2_HUMAN
-
0
0
-
-
1.2
ENST00000376213
2
ENSE00001469812
chr9:
87284217-87284338
122
NTRK2_HUMAN
-
0
0
-
-
1.3a
ENST00000376213
3a
ENSE00001469810
chr9:
87284595-87284803
209
NTRK2_HUMAN
-
0
0
-
-
1.4a
ENST00000376213
4a
ENSE00001343633
chr9:
87285292-87285875
584
NTRK2_HUMAN
1-71
71
0
-
-
1.5
ENST00000376213
5
ENSE00001264558
chr9:
87317074-87317148
75
NTRK2_HUMAN
71-96
26
0
-
-
1.6
ENST00000376213
6
ENSE00000982953
chr9:
87317263-87317334
72
NTRK2_HUMAN
96-120
25
0
-
-
1.7
ENST00000376213
7
ENSE00001264539
chr9:
87322759-87322827
69
NTRK2_HUMAN
120-143
24
0
-
-
1.8
ENST00000376213
8
ENSE00001264532
chr9:
87325552-87325706
155
NTRK2_HUMAN
143-195
53
0
-
-
1.9
ENST00000376213
9
ENSE00000982956
chr9:
87338488-87338624
137
NTRK2_HUMAN
195-240
46
0
-
-
1.10
ENST00000376213
10
ENSE00001264518
chr9:
87339139-87339271
133
NTRK2_HUMAN
241-285
45
0
-
-
1.11
ENST00000376213
11
ENSE00001264511
chr9:
87342569-87342874
306
NTRK2_HUMAN
285-387
103
0
-
-
1.12
ENST00000376213
12
ENSE00001025534
chr9:
87356807-87356842
36
NTRK2_HUMAN
387-399
13
0
-
-
1.13
ENST00000376213
13
ENSE00001264498
chr9:
87359888-87359988
101
NTRK2_HUMAN
399-432
34
0
-
-
1.14
ENST00000376213
14
ENSE00000982960
chr9:
87366901-87367000
100
NTRK2_HUMAN
433-466
34
0
-
-
1.17
ENST00000376213
17
ENSE00001090519
chr9:
87482158-87482346
189
NTRK2_HUMAN
466-529
64
1
A:1-545 (gaps)
12
1.19
ENST00000376213
19
ENSE00001090518
chr9:
87549077-87549207
131
NTRK2_HUMAN
529-572
44
1
A:545-588 (gaps)
44
1.20
ENST00000376213
20
ENSE00001090522
chr9:
87563377-87563549
173
NTRK2_HUMAN
573-630
58
1
A:589-646
58
1.21
ENST00000376213
21
ENSE00001090521
chr9:
87570198-87570432
235
NTRK2_HUMAN
630-708
79
1
A:646-724 (gaps)
79
1.22
ENST00000376213
22
ENSE00001714994
chr9:
87635121-87635279
159
NTRK2_HUMAN
709-761
53
1
A:725-777
53
1.23c
ENST00000376213
23c
ENSE00001469734
chr9:
87636167-87638505
2339
NTRK2_HUMAN
762-822
61
1
A:778-838
61
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d4asza_ (A:)
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Protein Domains
(
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
automated matches
(529)
Protein domain
:
automated matches
(529)
Human (Homo sapiens) [TaxId: 9606]
(438)
1a
d4asza_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (61 KB)
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