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4ARY
Asym. Unit
Info
Asym.Unit (378 KB)
Biol.Unit 1 (99 KB)
Biol.Unit 2 (98 KB)
Biol.Unit 3 (98 KB)
Biol.Unit 4 (97 KB)
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(1)
Title
:
LEPIDOPTERAN-SPECIFIC TOXIN CRY1AC IN COMPLEX WITH RECEPTOR SPECIFICITY DETERMINANT GALNAC
Authors
:
D. J. Derbyshire, J. Carroll, D. J. Ellar, J. Li
Date
:
27 Apr 12 (Deposition) - 15 May 13 (Release) - 05 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.95
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Toxin, Membrane Pore-Forming Toxin, Insecticidal Protein, Lepidopteran Specificity, Carbohydrate Recognition, Manduca Sexta, Aminopeptidase N
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
D. J. Derbyshire, J. Carroll, D. J. Ellar, J. Li
Structural Basis Of Galnac-Dependent Receptor Recognition By B. Thuringiensis Toxin Cry1Ac
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: 1,3-DIAMINOPROPANE (13Da)
1b: 1,3-DIAMINOPROPANE (13Db)
2a: N-ACETYL-D-GALACTOSAMINE (NGAa)
2b: N-ACETYL-D-GALACTOSAMINE (NGAb)
2c: N-ACETYL-D-GALACTOSAMINE (NGAc)
2d: N-ACETYL-D-GALACTOSAMINE (NGAd)
View:
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No.
Name
Count
Type
Full Name
1
13D
2
Ligand/Ion
1,3-DIAMINOPROPANE
2
NGA
4
Ligand/Ion
N-ACETYL-D-GALACTOSAMINE
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:508 , GLN A:509 , ARG A:511 , ARG A:590 , HOH A:2020
BINDING SITE FOR RESIDUE NGA A1609
2
AC2
SOFTWARE
ASN A:418 , PRO A:421 , ASN A:275
BINDING SITE FOR RESIDUE 13D A1610
3
AC3
SOFTWARE
ILE B:508 , GLN B:509 , ARG B:511 , ARG B:590
BINDING SITE FOR RESIDUE NGA B1612
4
AC4
SOFTWARE
ASN B:418 , ASN B:275
BINDING SITE FOR RESIDUE 13D B1613
5
AC5
SOFTWARE
ILE C:508 , GLN C:509 , ARG C:511 , ARG C:590
BINDING SITE FOR RESIDUE NGA C1609
6
AC6
SOFTWARE
ILE D:508 , GLN D:509 , ARG D:511 , ARG D:590
BINDING SITE FOR RESIDUE NGA D1609
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 12)
Info
All SCOP Domains
1a: SCOP_d4arya2 (A:256-462)
1b: SCOP_d4aryb2 (B:256-462)
1c: SCOP_d4aryc2 (C:256-462)
1d: SCOP_d4aryd2 (D:256-462)
2a: SCOP_d4arya3 (A:463-609)
2b: SCOP_d4aryb3 (B:463-611)
2c: SCOP_d4aryc3 (C:463-609)
2d: SCOP_d4aryd3 (D:463-609)
3a: SCOP_d4arya1 (A:31-255)
3b: SCOP_d4aryb1 (B:32-255)
3c: SCOP_d4aryc1 (C:32-255)
3d: SCOP_d4aryd1 (D:32-255)
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)
Protein Domains
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)
(
)
Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
beta-Prism I
(50)
Superfamily
:
delta-Endotoxin (insectocide), middle domain
(7)
Family
:
automated matches
(3)
Protein domain
:
automated matches
(3)
Bacillus thuringiensis [TaxId: 29339]
(2)
1a
d4arya2
A:256-462
1b
d4aryb2
B:256-462
1c
d4aryc2
C:256-462
1d
d4aryd2
D:256-462
Fold
:
Galactose-binding domain-like
(314)
Superfamily
:
Galactose-binding domain-like
(314)
Family
:
automated matches
(85)
Protein domain
:
automated matches
(85)
Bacillus thuringiensis [TaxId: 29339]
(2)
2a
d4arya3
A:463-609
2b
d4aryb3
B:463-611
2c
d4aryc3
C:463-609
2d
d4aryd3
D:463-609
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Toxins' membrane translocation domains
(135)
Superfamily
:
delta-Endotoxin (insectocide), N-terminal domain
(7)
Family
:
automated matches
(2)
Protein domain
:
automated matches
(2)
Bacillus thuringiensis [TaxId: 29339]
(1)
3a
d4arya1
A:31-255
3b
d4aryb1
B:32-255
3c
d4aryc1
C:32-255
3d
d4aryd1
D:32-255
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CATH Domains
(0, 0)
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (378 KB)
Header - Asym.Unit
Biol.Unit 1 (99 KB)
Header - Biol.Unit 1
Biol.Unit 2 (98 KB)
Header - Biol.Unit 2
Biol.Unit 3 (98 KB)
Header - Biol.Unit 3
Biol.Unit 4 (97 KB)
Header - Biol.Unit 4
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