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4ARV
Biol. Unit 2
Info
Asym.Unit (295 KB)
Biol.Unit 1 (147 KB)
Biol.Unit 2 (146 KB)
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(1)
Title
:
YERSINIA KRISTENSENII PHYTASE APO FORM
Authors
:
A. Ariza, O. V. Moroz, E. B. Blagova, J. P. Turkenburg, J. Vevodova, S. Ro J. Vind, C. Sjoholm, S. F. Lassen, L. De Maria, V. Glitsoe, L. K. Skov, K. S. Wilson
Date
:
26 Apr 12 (Deposition) - 08 May 13 (Release) - 05 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.67
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase, 6-Phytase, Myo-Inositol Hexakis Phosphate Phosphohydrolase, Histidine Acid Phosphatase, Happ
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Ariza, O. V. Moroz, E. V. Blagova, J. P. Turkenburg, J. Waterman, S. M. Roberts, J. Vind, C. Sjoholm, S. F. Lassen, L. De Maria, V. Glitsoe, L. K. Skov, K. S. Wilson
Degradation Of Phytate By The 6-Phytase From Hafnia Alvei: A Combined Structural And Solution Study.
Plos One V. 8 65062 2013
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
2a: 2,5,8,11,14,17-HEXAOXANONADECAN-19... (P15a)
3a: PHOSPHATE ION (PO4a)
3b: PHOSPHATE ION (PO4b)
3c: PHOSPHATE ION (PO4c)
3d: PHOSPHATE ION (PO4d)
4a: 2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ET... (TOEa)
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No.
Name
Count
Type
Full Name
1
EDO
3
Ligand/Ion
1,2-ETHANEDIOL
2
P15
1
Ligand/Ion
2,5,8,11,14,17-HEXAOXANONADECAN-19-OL
3
PO4
2
Ligand/Ion
PHOSPHATE ION
4
TOE
-1
Ligand/Ion
2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL
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Sites
(6, 6)
Info
All Sites
1: AC7 (SOFTWARE)
2: AC8 (SOFTWARE)
3: AC9 (SOFTWARE)
4: BC1 (SOFTWARE)
5: BC2 (SOFTWARE)
6: BC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC7
SOFTWARE
ARG B:17 , HIS B:18 , ARG B:21 , ARG B:92 , HIS B:306 , ASP B:307 , HOH B:2187
BINDING SITE FOR RESIDUE PO4 B1415
2
AC8
SOFTWARE
ASP B:90 , ARG B:92 , HIS B:126 , HIS B:306 , HOH B:2182 , HOH B:2187 , HOH B:2188 , HOH B:2262 , HOH B:2263
BINDING SITE FOR RESIDUE PO4 B1416
3
AC9
SOFTWARE
ARG B:21 , PRO B:23 , THR B:24 , THR B:218 , GLU B:221 , ILE B:222 , HOH B:2039 , HOH B:2438
BINDING SITE FOR RESIDUE EDO B1417
4
BC1
SOFTWARE
GLY B:167 , ASN B:171 , PHE B:172 , SER B:173 , HOH B:2345
BINDING SITE FOR RESIDUE EDO B1418
5
BC2
SOFTWARE
VAL B:207 , MET B:259 , ALA B:260 , LYS B:269 , THR B:308 , ASN B:312 , HOH B:2388 , HOH B:2591
BINDING SITE FOR RESIDUE EDO B1419
6
BC3
SOFTWARE
TYR B:7 , TYR B:70 , TRP B:341 , ILE B:378 , ASN B:392 , HOH B:2002 , HOH B:2592 , HOH B:2593 , HOH B:2594
BINDING SITE FOR RESIDUE P15 B1420
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4arva_ (A:)
1b: SCOP_d4arvb_ (B:)
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Phosphoglycerate mutase-like
(103)
Superfamily
:
Phosphoglycerate mutase-like
(103)
Family
:
automated matches
(13)
Protein domain
:
automated matches
(13)
Yersinia kristensenii [TaxId: 28152]
(1)
1a
d4arva_
A:
1b
d4arvb_
B:
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CATH Domains
(0, 0)
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Pfam Domains
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Chain B
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (295 KB)
Header - Asym.Unit
Biol.Unit 1 (147 KB)
Header - Biol.Unit 1
Biol.Unit 2 (146 KB)
Header - Biol.Unit 2
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