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Getting 'Biological Unit' information from database.
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Getting 'Exon' information from database.
4AQ8
Asym. Unit
Info
Asym.Unit (317 KB)
Biol.Unit 1 (157 KB)
Biol.Unit 2 (156 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MOUSE CADHERIN-23 EC1-2 AND PROTOCADHERIN-15 EC1-2 FORM II
Authors
:
M. Sotomayor, W. Weihofen, R. Gaudet, D. P. Corey
Date
:
13 Apr 12 (Deposition) - 07 Nov 12 (Release) - 12 Dec 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.63
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Cell Adhesion, Deafness
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Sotomayor, W. Weihofen, R. Gaudet, D. P. Corey
Structure Of A Force-Conveying Cadherin Bond Essential For Inner-Ear Mechanotransduction
Nature V. 492 128 2012
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Hetero Components
(1, 14)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
1l: CALCIUM ION (CAl)
1m: CALCIUM ION (CAm)
1n: CALCIUM ION (CAn)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
14
Ligand/Ion
CALCIUM ION
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:4 , ARG A:5 , ASP A:37 , ASP A:39 , ASP A:41 , ASP A:87
BINDING SITE FOR RESIDUE CA A1209
02
AC2
SOFTWARE
GLU A:22 , ASP A:72 , GLU A:74 , ASP A:105 , HOH A:2016 , HOH A:2053
BINDING SITE FOR RESIDUE CA A1210
03
AC3
SOFTWARE
GLU A:22 , GLU A:74 , ASP A:102 , VAL A:103 , ASP A:105 , ASP A:138
BINDING SITE FOR RESIDUE CA A1211
04
AC4
SOFTWARE
ASN A:104 , ASN A:106 , ASP A:136 , ASP A:138 , GLY A:142 , ASP A:187
BINDING SITE FOR RESIDUE CA A1212
05
AC5
SOFTWARE
ASN B:4 , ARG B:5 , ASP B:37 , ASP B:39 , ASP B:41 , ASP B:87
BINDING SITE FOR RESIDUE CA B1209
06
AC6
SOFTWARE
GLU B:22 , ASP B:72 , GLU B:74 , ASP B:105 , HOH B:2024 , HOH B:2059
BINDING SITE FOR RESIDUE CA B1210
07
AC7
SOFTWARE
ASN B:104 , ASN B:106 , ASP B:136 , ASP B:138 , GLY B:142 , ASP B:187
BINDING SITE FOR RESIDUE CA B1211
08
AC8
SOFTWARE
GLU B:22 , GLU B:74 , ASP B:102 , VAL B:103 , ASP B:105 , ASP B:138
BINDING SITE FOR RESIDUE CA B1212
09
AC9
SOFTWARE
ASN C:120 , ASN C:122 , ASP C:157 , ASP C:159 , ASN C:163 , ASP C:215
BINDING SITE FOR RESIDUE CA C1238
10
BC1
SOFTWARE
GLU C:27 , GLU C:28 , ASP C:83 , ASP C:85 , ASP C:121 , HOH C:2050
BINDING SITE FOR RESIDUE CA C1239
11
BC2
SOFTWARE
GLU C:27 , ASP C:85 , ASP C:118 , ARG C:119 , ASP C:121 , ASP C:159
BINDING SITE FOR RESIDUE CA C1240
12
BC3
SOFTWARE
GLU D:27 , GLU D:28 , ASP D:83 , ASP D:85 , ASP D:121 , HOH D:2037
BINDING SITE FOR RESIDUE CA D1238
13
BC4
SOFTWARE
GLU D:27 , ASP D:85 , ASP D:118 , ARG D:119 , ASP D:121 , ASP D:159
BINDING SITE FOR RESIDUE CA D1239
14
BC5
SOFTWARE
ASN D:120 , ASN D:122 , ASP D:157 , ASP D:159 , ASN D:163 , ASP D:215
BINDING SITE FOR RESIDUE CA D1240
[
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_CAD23_MOUSE_002 (L207V, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_CAD23_MOUSE_002
*
M
229
V
CAD23_MOUSE
---
---
A/B
L
207
V
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 10)
Info
All PROSITE Patterns/Profiles
1: CADHERIN_2 (A:20-110,B:20-110|A:111-206,B:111-...)
2: CADHERIN_1 (A:98-108,B:98-108|-|-|-|-|-|-|-|-|...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CADHERIN_2
PS50268
Cadherins domain profile.
CAD23_MOUSE
42-132
133-236
237-348
349-460
461-561
562-671
672-784
779-890
891-995
996-1102
1103-1208
1210-1313
1314-1418
1420-1527
1529-1634
1635-1744
1759-1851
1852-1959
1960-2069
2070-2174
2175-2293
2297-2402
2403-2509
2510-2611
2614-2722
2729-2846
2847-2975
4
A:20-110
B:20-110
A:111-206
B:111-206
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
PCD15_MOUSE
153-270
283-400
401-514
515-621
622-722
724-824
825-931
932-1040
1042-1149
1150-1264
2
C:127-233
D:127-233
-
-
-
-
-
-
-
-
-
2
CADHERIN_1
PS00232
Cadherin domain signature.
CAD23_MOUSE
120-130
336-346
549-559
659-669
766-776
878-888
1090-1100
1406-1416
1515-1525
1622-1632
1732-1742
1839-1849
1947-1957
2057-2067
2281-2291
2390-2400
2599-2609
2
A:98-108
B:98-108
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
PCD15_MOUSE
140-150
502-512
710-720
1137-1147
2
C:114-124
D:114-124
-
-
-
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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all CATH domains
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Sorry, no Info available
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Pfam Domains
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Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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Show PDB file:
Asym.Unit (317 KB)
Header - Asym.Unit
Biol.Unit 1 (157 KB)
Header - Biol.Unit 1
Biol.Unit 2 (156 KB)
Header - Biol.Unit 2
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