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4APY
Asym. Unit
Info
Asym.Unit (82 KB)
Biol.Unit 1 (149 KB)
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(1)
Title
:
ETHYLENE GLYCOL-BOUND FORM OF P450 CYP125A3 FROM MYCOBACTERIUM SMEGMATIS
Authors
:
D. J. Frank, E. Garcia Fernandez, P. M. Kells, J. L. Garcia Lopez, L. M. P. R. Ortiz De Montellano
Date
:
09 Apr 12 (Deposition) - 27 Feb 13 (Release) - 14 Aug 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Oxidoreductase, Cholesterol Metabolism
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Garcia-Fernandez, D. J. Frank, B. Galan, P. M. Kells, L. M. Podust, J. L. Garcia, P. R. Ortiz De Montellano
A Highly Conserved Mycobacterial Cholesterol Catabolic Pathway.
Environ. Microbiol. V. 15 2342 2013
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Hetero Components
(3, 13)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
EDO
11
Ligand/Ion
1,2-ETHANEDIOL
3
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:20 , LYS A:63 , PRO A:348 , HIS A:349 , THR A:355 , HOH A:2095
BINDING SITE FOR RESIDUE EDO A1416
02
AC2
SOFTWARE
TYR A:277 , ARG A:281 , PRO A:282 , GLU A:283 , ASN A:371 , ASN A:375
BINDING SITE FOR RESIDUE EDO A1417
03
AC3
SOFTWARE
LEU A:99 , LEU A:100 , HIS A:107 , ARG A:111 , ALA A:251 , GLY A:252 , THR A:255 , THR A:256 , PRO A:295 , PHE A:299 , ARG A:301 , TYR A:324 , GLY A:351 , PHE A:352 , GLY A:353 , GLY A:354 , ALA A:357 , HIS A:358 , CYS A:360 , ILE A:361 , GLY A:362 , EDO A:1423 , HOH A:2105 , HOH A:2277 , HOH A:2314
BINDING SITE FOR RESIDUE HEM A1418
04
AC4
SOFTWARE
HIS A:262 , ARG A:392 , HOH A:2245
BINDING SITE FOR RESIDUE EDO A1419
05
AC5
SOFTWARE
VAL A:24 , TRP A:292 , HIS A:338 , HOH A:2272 , HOH A:2296
BINDING SITE FOR RESIDUE EDO A1420
06
AC6
SOFTWARE
ILE A:80 , PHE A:299 , EDO A:1423 , HOH A:2135
BINDING SITE FOR RESIDUE EDO A1421
07
AC7
SOFTWARE
SER A:75 , PRO A:76 , ASP A:93 , ARG A:96 , HOH A:2134
BINDING SITE FOR RESIDUE EDO A1422
08
AC8
SOFTWARE
MET A:247 , ALA A:251 , HEM A:1418 , EDO A:1421
BINDING SITE FOR RESIDUE EDO A1423
09
AC9
SOFTWARE
CYS A:155 , GLU A:156 , ASN A:181 , HOH A:2211
BINDING SITE FOR RESIDUE EDO A1424
10
BC1
SOFTWARE
ASP A:195 , PRO A:196 , ALA A:197 , MET A:198
BINDING SITE FOR RESIDUE EDO A1425
11
BC2
SOFTWARE
PHE A:10 , ASP A:11 , ASP A:14 , HOH A:2030
BINDING SITE FOR RESIDUE EDO A1427
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d4apya_ (A:)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
Cytochrome P450
(480)
Superfamily
:
Cytochrome P450
(480)
Family
:
automated matches
(157)
Protein domain
:
automated matches
(157)
Mycobacterium smegmatis [TaxId: 1772]
(1)
1a
d4apya_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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Asym.Unit (82 KB)
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