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4APP
Asym. Unit
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Asym.Unit (57 KB)
Biol.Unit 1 (53 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HUMAN P21-ACTIVATED KINASE 4 IN COMPLEX WITH (S)-N-(5-(3-BENZYL-1-METHYLPIPERAZINE-4-CARBONYL)-6,6-DIMETHYL-1,4,5,6-TETRAHYDROPYRROLO(3,4-C) PYRAZOL-3-YL)-3-PHENOXYBENZAMIDE
Authors
:
D. D. Knighton, Y. L. Deng, C. Wang, C. Guo, I. Mcalpine, J. Zhang, S. Keph M. C. Johnson, H. Li, D. Bouzida, A. Yang, L. Dong, J. Marakovits, J. Tik P. Richardson, L. C. Guo, R. Kania, M. P. Edwards, E. Kraynov, J. Christ J. Piraino, J. Lee, E. Dagostino, C. Del-Carmen, T. Smeal, B. W. Murray
Date
:
04 Apr 12 (Deposition) - 06 Jun 12 (Release) - 06 Jun 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Transferase, Protein Kinase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
C. Guo, I. Mcalpine, J. Zhang, D. D. Knighton, S. Kephart, M. C. Johnson H. Li, D. Bouzida, A. Yang, L. Dong, J. Marakovits, J. Tikhe, P. Richardson, L. C. Guo, R. Kania, M. P. Edwards, E. Kraynov, J. Christensen, J. Piraino, J. Lee, E. Dagostino, C. Del-Carmen, Y. L. Deng, T. Smeal, B. W. Murray
Discovery Of Pyrroloaminopyrazoles As Novel Pak Inhibitors.
J. Med. Chem. V. 55 4728 2012
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
2a: N-[6,6-DIMETHYL-5-[(2S)-4-METHYL-2... (N53a)
3a: PHOSPHOSERINE (SEPa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
1
Ligand/Ion
GLYCEROL
2
N53
1
Ligand/Ion
N-[6,6-DIMETHYL-5-[(2S)-4-METHYL-2-(PHENYLMETHYL)PIPERAZIN-1-YL]CARBONYL-2,4-DIHYDROPYRROLO[3,4-C]PYRAZOL-3-YL]-3-PHENOXY-BENZAMIDE
3
SEP
1
Mod. Amino Acid
PHOSPHOSERINE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:309 , LEU A:310 , GLY A:330 , GLY A:333 , ILE A:334 , VAL A:335 , ALA A:348 , LYS A:350 , GLU A:396 , PHE A:397 , LEU A:398 , GLU A:399 , GLY A:401 , ASP A:405 , ASP A:444 , LEU A:447 , ASP A:458 , ARG A:586 , GOL A:602 , HOH A:2179
BINDING SITE FOR RESIDUE N53 A 601
2
AC2
SOFTWARE
GLY A:330 , SER A:331 , ASP A:440 , LYS A:442 , PHE A:461 , THR A:478 , N53 A:601 , HOH A:2181 , HOH A:2182
BINDING SITE FOR RESIDUE GOL A 602
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:327-351)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
PAK4_HUMAN
327-351
1
A:327-351
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Exons
(6, 6)
Info
All Exons
Exon 1.5 (A:299-366)
Exon 1.6 (A:367-411)
Exon 1.7 (A:411-453)
Exon 1.8 (A:454-495)
Exon 1.9 (A:496-540)
Exon 1.10 (A:541-591)
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All Exon Boundaries
1: Boundary 1.4/1.5
2: Boundary 1.5/1.6
3: Boundary 1.6/1.7
4: Boundary 1.7/1.8
5: Boundary 1.8/1.9
6: Boundary 1.9/1.10
7: Boundary 1.10/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2
ENST00000360442
2
ENSE00001510615
chr19:
39659251-39659480
230
PAK4_HUMAN
-
0
0
-
-
1.3b
ENST00000360442
3b
ENSE00000882572
chr19:
39660172-39660397
226
PAK4_HUMAN
1-68
68
0
-
-
1.4
ENST00000360442
4
ENSE00001242921
chr19:
39663558-39664016
459
PAK4_HUMAN
69-221
153
0
-
-
1.5
ENST00000360442
5
ENSE00000882573
chr19:
39664216-39664650
435
PAK4_HUMAN
222-366
145
1
A:299-366
68
1.6
ENST00000360442
6
ENSE00001777324
chr19:
39665571-39665704
134
PAK4_HUMAN
367-411
45
1
A:367-411
45
1.7
ENST00000360442
7
ENSE00000882575
chr19:
39665952-39666078
127
PAK4_HUMAN
411-453
43
1
A:411-453
43
1.8
ENST00000360442
8
ENSE00000704690
chr19:
39667230-39667355
126
PAK4_HUMAN
454-495
42
1
A:454-495
42
1.9
ENST00000360442
9
ENSE00000882577
chr19:
39668315-39668449
135
PAK4_HUMAN
496-540
45
1
A:496-540
45
1.10
ENST00000360442
10
ENSE00001296813
chr19:
39669064-39670046
983
PAK4_HUMAN
541-591
51
1
A:541-591
51
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d4appa_ (A:)
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
automated matches
(529)
Protein domain
:
automated matches
(529)
Human (Homo sapiens) [TaxId: 9606]
(438)
1a
d4appa_
A:
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CATH Domains
(0, 0)
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Pfam Domains
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Chain A
Asymmetric Unit 1
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