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4AOR
Asym. Unit
Info
Asym.Unit (143 KB)
Biol.Unit 1 (47 KB)
Biol.Unit 2 (47 KB)
Biol.Unit 3 (45 KB)
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(1)
Title
:
CATIONIC TRYPSIN IN COMPLEX WITH THE SPINACIA OLERACEA TRYPSIN INHIBITOR III (SOTI-III)
Authors
:
S. Schmelz, B. Glotzbach, M. Reinwarth, A. Christmann, H. Kolmar, D. W.
Date
:
29 Mar 12 (Deposition) - 09 Jan 13 (Release) - 16 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,E (1x)
Biol. Unit 3: C,F (1x)
Keywords
:
Hydrolase-Inhibitor Complex, Miniprotein Scaffold, Knottins, Serine Protease Inhibitor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Glotzbach, S. Schmelz, M. Reinwarth, A. Christmann, D. W. Heinz, H. Kolmar
Structural Characterization Of Spinacia Oleracea Trypsin Inhibitor Iii (Soti-Iii)
Acta Crystallogr. , Sect. D V. 69 114 2013
[
close entry info
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Hetero Components
(5, 20)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
4a: IMIDAZOLE (IMDa)
4b: IMIDAZOLE (IMDb)
4c: IMIDAZOLE (IMDc)
4d: IMIDAZOLE (IMDd)
4e: IMIDAZOLE (IMDe)
4f: IMIDAZOLE (IMDf)
4g: IMIDAZOLE (IMDg)
5a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
CL
2
Ligand/Ion
CHLORIDE ION
3
GOL
6
Ligand/Ion
GLYCEROL
4
IMD
7
Ligand/Ion
IMIDAZOLE
5
MES
1
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
[
close Hetero Component info
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:66 , SER A:67 , GLY A:68 , ILE A:69 , ALA A:90 , SER A:93 , HOH A:2063 , HOH A:2210 , SER B:134
BINDING SITE FOR RESIDUE GOL A1247
02
AC2
SOFTWARE
GLN A:138 , LEU A:140 , VAL A:205 , CYS A:206 , SER A:207 , GLY A:208 , HOH A:2211 , HOH E:2014
BINDING SITE FOR RESIDUE GOL A1248
03
AC3
SOFTWARE
GLN A:138 , PRO A:164 , TYR A:188 , HOH A:2178
BINDING SITE FOR RESIDUE GOL A1249
04
AC4
SOFTWARE
HIS A:96 , ASN A:106 , ASN A:182 , TYR A:235
BINDING SITE FOR RESIDUE GOL A1250
05
AC5
SOFTWARE
ARG A:72 , GLU A:75 , ILE A:78 , HOH A:2029
BINDING SITE FOR RESIDUE CL A1251
06
AC6
SOFTWARE
ASN A:100 , ASN A:105 , HOH A:2105
BINDING SITE FOR RESIDUE CL A1252
07
AC7
SOFTWARE
ASN A:42 , TYR A:45 , HIS A:46 , ILE A:78 , ASN A:79 , PHE D:14
BINDING SITE FOR RESIDUE IMD A1253
08
AC8
SOFTWARE
ASN A:102 , THR A:103 , GLN A:178 , TRP A:216 , HOH A:2104 , PHE C:87
BINDING SITE FOR RESIDUE IMD A1254
09
AC9
SOFTWARE
GLU A:75 , ASN A:77 , VAL A:80 , GLU A:85 , HOH A:2068 , HOH A:2069
BINDING SITE FOR RESIDUE CA A1255
10
BC1
SOFTWARE
TYR B:175 , GLN B:178 , SER B:218 , IMD B:1250 , ILE E:30
BINDING SITE FOR RESIDUE GOL B1247
11
BC2
SOFTWARE
LYS B:66 , GLY B:68 , ILE B:69 , ALA B:90 , SER B:93
BINDING SITE FOR RESIDUE IMD B1248
12
BC3
SOFTWARE
TYR B:45 , HIS B:46 , ILE B:78 , ASN B:79
BINDING SITE FOR RESIDUE IMD B1249
13
BC4
SOFTWARE
ASN B:102 , THR B:103 , GLN B:178 , GOL B:1247 , IMD B:1251 , HOH B:2089
BINDING SITE FOR RESIDUE IMD B1250
14
BC5
SOFTWARE
SER B:101 , ASN B:102 , IMD B:1250 , HIS E:28
BINDING SITE FOR RESIDUE IMD B1251
15
BC6
SOFTWARE
GLU B:75 , ASN B:77 , VAL B:80 , GLU B:85 , HOH B:2059 , HOH B:2060
BINDING SITE FOR RESIDUE CA B1252
16
BC7
SOFTWARE
SER B:170 , HOH B:2141 , HOH B:2187
BINDING SITE FOR RESIDUE CA B1253
17
BC8
SOFTWARE
PRO A:129 , THR A:130 , SER A:131 , CYS A:233 , VAL A:236 , SER A:237 , LYS A:240 , HOH A:2197 , SER B:237 , TRP B:238 , GLN B:241 , HOH B:2082 , HOH B:2177
BINDING SITE FOR RESIDUE MES B1254
18
BC9
SOFTWARE
ASN C:102 , THR C:103 , GLN C:178 , TRP C:216
BINDING SITE FOR RESIDUE GOL C1247
19
CC1
SOFTWARE
ASN C:42 , TYR C:45 , HIS C:46 , ILE C:78 , ASN C:79 , PHE F:14
BINDING SITE FOR RESIDUE IMD C1248
20
CC2
SOFTWARE
HOH A:2172 , GLU C:75 , ASN C:77 , VAL C:80 , GLU C:85 , HOH C:2051
BINDING SITE FOR RESIDUE CA C1249
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(3, 9)
Info
All PROSITE Patterns/Profiles
1: TRYPSIN_DOM (A:24-244,B:24-244,C:24-244)
2: TRYPSIN_HIS (A:59-64,B:59-64,C:59-64)
3: TRYPSIN_SER (A:194-205,B:194-205,C:194-205)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
TRY1_BOVIN
24-244
3
A:24-244
B:24-244
C:24-244
2
TRYPSIN_HIS
PS00134
Serine proteases, trypsin family, histidine active site.
TRY1_BOVIN
59-64
3
A:59-64
B:59-64
C:59-64
3
TRYPSIN_SER
PS00135
Serine proteases, trypsin family, serine active site.
TRY1_BOVIN
194-205
3
A:194-205
B:194-205
C:194-205
[
close PROSITE info
]
Exons
(4, 12)
Info
All Exons
Exon 1.2 (A:24-69 | B:24-69 | C:24-69)
Exon 1.3 (A:69-154 | B:69-154 | C:69-154)
Exon 1.4 (A:154-199 | B:154-199 | C:154-199)
Exon 1.5 (A:200-246 | B:200-246 | C:200-246)
View:
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All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000033479
1
ENSBTAE00000401279
chr4:
109299627-109299547
81
TRY1_BOVIN
1-16
16
0
-
-
1.2
ENSBTAT00000033479
2
ENSBTAE00000397626
chr4:
109298170-109298011
160
TRY1_BOVIN
16-69
54
3
A:24-69
B:24-69
C:24-69
46
46
46
1.3
ENSBTAT00000033479
3
ENSBTAE00000409037
chr4:
109297593-109297340
254
TRY1_BOVIN
69-154
86
3
A:69-154
B:69-154
C:69-154
86
86
86
1.4
ENSBTAT00000033479
4
ENSBTAE00000386782
chr4:
109296654-109296518
137
TRY1_BOVIN
154-199
46
3
A:154-199
B:154-199
C:154-199
46
46
46
1.5
ENSBTAT00000033479
5
ENSBTAE00000422174
chr4:
109295990-109295749
242
TRY1_BOVIN
200-248
49
3
A:200-246
B:200-246
C:200-246
47
47
47
[
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]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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]
Atom Selection
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Hetero
Ligand
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Protein & NOT Site
Protein & NOT PROSITE
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Chain C
Chain D
Chain E
Chain F
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