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4AOJ
Biol. Unit 1
Info
Asym.Unit (139 KB)
Biol.Unit 1 (515 KB)
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(1)
Title
:
HUMAN TRKA IN COMPLEX WITH THE INHIBITOR AZ-23
Authors
:
T. Wang, M. L. Lamb, M. H. Block, A. M. Davies, Y. Han, E. Hoffmann, S. Ioan J. A. Josey, Z. Liu, P. D. Lyne, T. Macintyre, P. J. Mohr, C. A. Omer, T. Sj K. Thress, B. Wang, H. Wang, D. Yu, H. Zhang
Date
:
28 Mar 12 (Deposition) - 15 Aug 12 (Release) - 18 Jun 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (4x)
Keywords
:
Transferase, Inhibitor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Wang, M. L. Lamb, M. H. Block, A. M. Davies, Y. Han, E. Hoffmann, S. Ioannidis, J. A. Josey, Z. Liu, P. D. Lyne, T. Macintyre, P. J. Mohr, C. A. Omer, T. Sjogren, K. Thress, B. Wang, H. Wang, D. Yu, H. Zhang
Discovery Of Disubstituted Imidazo[4, 5-B]Pyridines And Purines As Potent Trka Inhibitors
Acs Med. Chem. Lett. V. 3 705 2012
[
close entry info
]
Hetero Components
(1, 12)
Info
All Hetero Components
1a: 5-CHLORANYL-N2-[(1S)-1-(5-FLUORANY... (V4Za)
1b: 5-CHLORANYL-N2-[(1S)-1-(5-FLUORANY... (V4Zb)
1c: 5-CHLORANYL-N2-[(1S)-1-(5-FLUORANY... (V4Zc)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
2e: ZINC ION (ZNe)
2f: ZINC ION (ZNf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
V4Z
12
Ligand/Ion
5-CHLORANYL-N2-[(1S)-1-(5-FLUORANYLPYRIDIN-2-YL)ETHYL]-N4-(3-PROPAN-2-YLOXY-1H-PYRAZOL-5-YL)PYRIMIDINE-2,4-DIAMINE
2
ZN
-1
Ligand/Ion
ZINC ION
[
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:516 , VAL A:524 , ALA A:542 , PHE A:589 , GLU A:590 , TYR A:591 , MET A:592 , ARG A:593 , GLY A:595 , ASP A:596 , ARG A:654 , ASN A:655 , CYS A:656 , LEU A:657 , GLY A:667 , ASP A:668 , HOH A:2036
BINDING SITE FOR RESIDUE V4Z A 900
2
AC2
SOFTWARE
LEU B:516 , VAL B:524 , ALA B:542 , PHE B:589 , GLU B:590 , TYR B:591 , MET B:592 , ARG B:593 , GLY B:595 , ARG B:654 , ASN B:655 , LEU B:657 , GLY B:667
BINDING SITE FOR RESIDUE V4Z B 900
3
AC3
SOFTWARE
LEU C:516 , VAL C:524 , ALA C:542 , GLU C:590 , TYR C:591 , MET C:592 , GLY C:595 , ASP C:596 , ARG C:654 , ASN C:655 , CYS C:656 , LEU C:657 , GLY C:667 , ASP C:668
BINDING SITE FOR RESIDUE V4Z C 900
4
AC4
SOFTWARE
HIS A:504 , CYS A:579 , GLU A:581 , CYS C:501
BINDING SITE FOR RESIDUE ZN A1790
5
AC5
SOFTWARE
GLU A:515 , GLU A:518 , LYS A:523 , HIS C:645
BINDING SITE FOR RESIDUE ZN A1791
6
AC6
SOFTWARE
CYS A:501 , HIS B:504 , CYS B:579 , GLU B:581
BINDING SITE FOR RESIDUE ZN B1792
7
AC7
SOFTWARE
HIS A:645 , GLU B:515 , GLU B:518 , LYS B:523
BINDING SITE FOR RESIDUE ZN B1793
8
AC8
SOFTWARE
CYS B:501 , HIS C:504 , CYS C:579 , GLU C:581
BINDING SITE FOR RESIDUE ZN C1790
9
AC9
SOFTWARE
HIS B:645 , GLU C:515 , GLU C:518 , LYS C:523
BINDING SITE FOR RESIDUE ZN C1791
[
close Site info
]
SAPs(SNPs)/Variants
(12, 136)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_009626 (G522R, chain A/B/C, )
02: VAR_041468 (M566T, chain A/B/C, )
03: VAR_004103 (G577R, chain A/B/C, )
04: VAR_009627 (M587V, chain A/B/C, )
05: VAR_009628 (H604Y, chain A/B/C, )
06: VAR_009630 (R649W, chain A/B/C, )
07: VAR_009631 (R654C, chain A/B/C, )
08: VAR_009633 (P695L, chain A/B/C, )
09: VAR_009634 (G714S, chain A/B/C, )
10: VAR_009635 (R780P, chain A/B/C, )
11: VAR_009636 (R780Q, chain A/B/C, )
12: VAR_041469 (V790I, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_009626
G
522
R
NTRK1_HUMAN
Disease (CIPA)
---
A/B/C
G
522
R
02
UniProt
VAR_041468
M
566
T
NTRK1_HUMAN
Polymorphism
55892037
A/B/C
M
566
T
03
UniProt
VAR_004103
G
577
R
NTRK1_HUMAN
Disease (CIPA)
---
A/B/C
G
577
R
04
UniProt
VAR_009627
M
587
V
NTRK1_HUMAN
Disease (CIPA)
---
A/B/C
M
587
V
05
UniProt
VAR_009628
H
604
Y
NTRK1_HUMAN
Polymorphism
6336
A/B/C
H
604
Y
06
UniProt
VAR_009630
R
649
W
NTRK1_HUMAN
Disease (CIPA)
---
A/B/C
R
649
W
07
UniProt
VAR_009631
R
654
C
NTRK1_HUMAN
Disease (CIPA)
---
A/B/C
R
654
C
08
UniProt
VAR_009633
P
695
L
NTRK1_HUMAN
Disease (CIPA)
---
A/B/C
P
695
L
09
UniProt
VAR_009634
G
714
S
NTRK1_HUMAN
Disease (CIPA)
---
A/B/C
G
714
S
10
UniProt
VAR_009635
R
780
P
NTRK1_HUMAN
Disease (CIPA)
35669708
A/B/C
R
780
P
11
UniProt
VAR_009636
R
780
Q
NTRK1_HUMAN
Polymorphism
35669708
A/B/C
R
780
Q
12
UniProt
VAR_041469
V
790
I
NTRK1_HUMAN
Polymorphism
55948542
B
V
790
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 24)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:516-544,B:516-544,C:516-544)
2: PROTEIN_KINASE_TYR (A:646-658,B:646-658,C:646-658)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
NTRK1_HUMAN
516-544
12
A:516-544
B:516-544
C:516-544
2
PROTEIN_KINASE_TYR
PS00109
Tyrosine protein kinases specific active-site signature.
NTRK1_HUMAN
646-658
12
A:646-658
B:646-658
C:646-658
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d4aoja_ (A:)
1b: SCOP_d4aojb_ (B:)
1c: SCOP_d4aojc_ (C:)
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Protein Domains
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(
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Organisms
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(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
automated matches
(529)
Protein domain
:
automated matches
(529)
Human (Homo sapiens) [TaxId: 9606]
(438)
1a
d4aoja_
A:
1b
d4aojb_
B:
1c
d4aojc_
C:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Atom Selection
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Protein & NOT Variant
Protein & NOT Site
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Asymmetric Unit 1
Asymmetric Unit 2
Asymmetric Unit 3
Asymmetric Unit 4
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