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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Site' information from database.
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Getting 'PROSITE' information from database.
4AMT
Biol. Unit 1
Info
Asym.Unit (125 KB)
Biol.Unit 1 (236 KB)
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(1)
Title
:
CRYSTAL STRUCTURE AT 2.6A OF HUMAN PRORENIN
Authors
:
A. Zhou
Date
:
13 Mar 12 (Deposition) - 20 Mar 13 (Release) - 20 Mar 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Hydrolase, Hormone,
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Zhou
The Crystal Structure Of Prorenin
To Be Published
[
close entry info
]
Hetero Components
(4, 18)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: ALPHA-L-FUCOSE (FUCa)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
FUC
2
Ligand/Ion
ALPHA-L-FUCOSE
3
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
SO4
10
Ligand/Ion
SULFATE ION
[
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:232 , LYS A:318
BINDING SITE FOR RESIDUE SO4 A1384
2
AC2
SOFTWARE
LYS A:116 , GLN A:137 , FUC A:1390
BINDING SITE FOR RESIDUE SO4 A1385
3
AC3
SOFTWARE
ILE A:176 , GLU A:177 , THR A:241 , ARG A:372
BINDING SITE FOR RESIDUE SO4 A1386
4
AC4
SOFTWARE
ASN A:57 , ASP A:60 , ALA A:272 , SER A:273 , TYR A:274
BINDING SITE FOR RESIDUE SO4 A1387
5
AC5
SOFTWARE
GLY A:70 , THR A:71 , ILE A:139 , THR A:141
BINDING SITE FOR RESIDUE SO4 A1388
6
AC6
SOFTWARE
ASN A:118 , THR A:120 , GLN A:137 , SO4 A:1385
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 118 RESIDUES 1389 TO 1392
[
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SAPs(SNPs)/Variants
(5, 10)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_020375 (R10W, chain A, )
2: VAR_035088 (D81N, chain A, )
3: VAR_029171 (Q137K, chain A, )
4: VAR_020376 (G194R, chain A, )
5: VAR_035087 (R207K, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_020375
R
33
W
RENI_HUMAN
Polymorphism
11571098
A
R
10
W
2
UniProt
VAR_035088
D
104
N
RENI_HUMAN
Disease (RTD)
---
A
D
81
N
3
UniProt
VAR_029171
Q
160
K
RENI_HUMAN
Polymorphism
11571083
A
Q
137
K
4
UniProt
VAR_020376
G
217
R
RENI_HUMAN
Polymorphism
11571117
A
G
194
R
5
UniProt
VAR_035087
R
230
K
RENI_HUMAN
Disease (RTD)
---
A
R
207
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 6)
Info
All PROSITE Patterns/Profiles
1: PEPTIDASE_A1 (A:63-380)
2: ASP_PROTEASE (A:266-277)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEPTIDASE_A1
PS51767
Peptidase family A1 domain profile.
RENI_HUMAN
86-403
2
A:63-380
2
ASP_PROTEASE
PS00141
Eukaryotic and viral aspartyl proteases active site.
RENI_HUMAN
101-112
289-300
4
A:78-89
A:266-277
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d4amta_ (A:)
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Classes
(
)
(
)
Folds
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)
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)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Acid proteases
(1120)
Superfamily
:
Acid proteases
(1120)
Family
:
automated matches
(23)
Protein domain
:
automated matches
(23)
Human (Homo sapiens) [TaxId: 9606]
(12)
1a
d4amta_
A:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Asymmetric Unit 2
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (125 KB)
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