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4AMF
Biol. Unit 2
Info
Asym.Unit (395 KB)
Biol.Unit 1 (197 KB)
Biol.Unit 2 (194 KB)
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(1)
Title
:
PSEUDOMONAS FLUORESCENS PHOX IN COMPLEX WITH THE SUBSTRATE ANALOGUE APPCP
Authors
:
S. C. Yong, P. Roversi, J. E. D. Lillington, O. B. Zeldin, E. F. Garman, S. B. C. Berks
Date
:
09 Mar 12 (Deposition) - 20 Mar 13 (Release) - 17 Sep 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.52
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase, Alkaline Phosphatase, Phox, Beta- Propeller, Iron, Appcp, Substrate Analogue, Phosphomethylphosphonic Acid Adenylate Ester
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. C. Yong, P. Roversi, J. Lillington, F. Rodriguez, M. Krehenbrink, O. B. Zeldin, E. F. Garman, S. M. Lea, B. C. Berks
A Complex Iron-Calcium Cofactor Catalyzing Phosphotransfer Chemistry
Science V. 345 1170 2014
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: PHOSPHOMETHYLPHOSPHONIC ACID ADENY... (ACPa)
1b: PHOSPHOMETHYLPHOSPHONIC ACID ADENY... (ACPb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
4a: 1,2-ETHANEDIOL (EDOa)
4b: 1,2-ETHANEDIOL (EDOb)
4c: 1,2-ETHANEDIOL (EDOc)
4d: 1,2-ETHANEDIOL (EDOd)
4e: 1,2-ETHANEDIOL (EDOe)
4f: 1,2-ETHANEDIOL (EDOf)
4g: 1,2-ETHANEDIOL (EDOg)
4h: 1,2-ETHANEDIOL (EDOh)
4i: 1,2-ETHANEDIOL (EDOi)
4j: 1,2-ETHANEDIOL (EDOj)
4k: 1,2-ETHANEDIOL (EDOk)
4l: 1,2-ETHANEDIOL (EDOl)
4m: 1,2-ETHANEDIOL (EDOm)
4n: 1,2-ETHANEDIOL (EDOn)
4o: 1,2-ETHANEDIOL (EDOo)
4p: 1,2-ETHANEDIOL (EDOp)
5a: MU-OXO-DIIRON (FEOa)
5b: MU-OXO-DIIRON (FEOb)
6a: LITHIUM ION (LIa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACP
1
Ligand/Ion
PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2
CA
-1
Ligand/Ion
CALCIUM ION
3
CL
-1
Ligand/Ion
CHLORIDE ION
4
EDO
7
Ligand/Ion
1,2-ETHANEDIOL
5
FEO
1
Ligand/Ion
MU-OXO-DIIRON
6
LI
-1
Ligand/Ion
LITHIUM ION
[
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Sites
(17, 17)
Info
All Sites
01: BC2 (SOFTWARE)
02: BC3 (SOFTWARE)
03: BC7 (SOFTWARE)
04: BC8 (SOFTWARE)
05: BC9 (SOFTWARE)
06: CC1 (SOFTWARE)
07: CC2 (SOFTWARE)
08: CC3 (SOFTWARE)
09: CC4 (SOFTWARE)
10: CC5 (SOFTWARE)
11: CC6 (SOFTWARE)
12: CC7 (SOFTWARE)
13: CC8 (SOFTWARE)
14: CC9 (SOFTWARE)
15: DC1 (SOFTWARE)
16: DC2 (SOFTWARE)
17: DC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
BC2
SOFTWARE
SER A:456 , PRO A:471 , EDO A:1601 , HOH A:2565 , HOH A:2640 , ALA B:18 , ASN B:499 , GLY B:505
BINDING SITE FOR RESIDUE EDO A1600
02
BC3
SOFTWARE
SER A:456 , PRO A:471 , MET A:474 , EDO A:1600 , HOH A:2600 , HOH A:2640 , HOH A:2641 , EDO B:1597 , EDO B:1601
BINDING SITE FOR RESIDUE EDO A1601
03
BC7
SOFTWARE
THR A:323 , TYR A:325 , GLU A:347 , LYS A:352 , LYS A:442 , ASN B:566
BINDING SITE FOR RESIDUE EDO A1605
04
BC8
SOFTWARE
PRO A:154 , GLN A:364 , HOH A:2448 , HOH A:2486 , PRO B:565 , ASN B:566 , HOH B:2559
BINDING SITE FOR RESIDUE EDO A1606
05
BC9
SOFTWARE
GLU B:90 , GLU B:194 , ASN B:195 , ARG B:223 , ASP B:292 , ARG B:294 , ARG B:385 , GLU B:387 , ASP B:479 , ASP B:494 , CA B:1590 , CA B:1591 , CA B:1592 , FEO B:1593 , HOH B:2141 , HOH B:2143 , HOH B:2271 , HOH B:2273 , HOH B:2276 , HOH B:2348 , HOH B:2435 , HOH B:2512 , HOH B:2571 , HOH B:2573
BINDING SITE FOR RESIDUE ACP B1589
06
CC1
SOFTWARE
GLU B:273 , GLU B:387 , ASP B:479 , ACP B:1589 , FEO B:1593 , HOH B:2116 , HOH B:2117 , HOH B:2500
BINDING SITE FOR RESIDUE CA B1590
07
CC2
SOFTWARE
GLU B:387 , ASP B:479 , ASP B:494 , ACP B:1589 , HOH B:2436
BINDING SITE FOR RESIDUE CA B1591
08
CC3
SOFTWARE
ASP B:494 , GLU B:532 , ACP B:1589 , HOH B:2139 , HOH B:2143
BINDING SITE FOR RESIDUE CA B1592
09
CC4
SOFTWARE
GLU B:90 , CYS B:179 , GLU B:194 , GLU B:273 , ASP B:292 , GLU B:387 , ACP B:1589 , CA B:1590 , HOH B:2117
BINDING SITE FOR RESIDUE FEO B1593
10
CC5
SOFTWARE
LYS B:183 , LEU B:277 , VAL B:391 , HOH B:2259 , HOH B:2260 , HOH B:2438 , HOH B:2439 , HOH B:2574
BINDING SITE FOR RESIDUE EDO B1595
11
CC6
SOFTWARE
TRP B:38 , ASN B:93 , TYR B:96 , HIS B:551 , PRO B:552 , PRO B:569 , ARG B:570 , HOH B:2112 , HOH B:2113
BINDING SITE FOR RESIDUE EDO B1596
12
CC7
SOFTWARE
ALA A:504 , GLY A:505 , EDO A:1601 , HOH A:2599 , SER B:456 , MET B:474
BINDING SITE FOR RESIDUE EDO B1597
13
CC8
SOFTWARE
GLY B:530 , GLY B:553 , ASN B:555 , GLY B:556 , GLY B:557
BINDING SITE FOR RESIDUE CL B1598
14
CC9
SOFTWARE
ALA A:18 , THR A:20 , ASN A:499 , HOH A:2020 , HOH A:2641 , GLN B:472
BINDING SITE FOR RESIDUE EDO B1599
15
DC1
SOFTWARE
ASN B:140 , PRO B:257 , HOH B:2072
BINDING SITE FOR RESIDUE EDO B1600
16
DC2
SOFTWARE
EDO A:1601 , HOH A:2641 , ILE B:16 , PRO B:17 , GLN B:472 , ARG B:523 , HOH B:2015 , HOH B:2575
BINDING SITE FOR RESIDUE EDO B1601
17
DC3
SOFTWARE
LYS B:183 , HOH B:2574
BINDING SITE FOR RESIDUE EDO B1602
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain B
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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Asym.Unit (395 KB)
Header - Asym.Unit
Biol.Unit 1 (197 KB)
Header - Biol.Unit 1
Biol.Unit 2 (194 KB)
Header - Biol.Unit 2
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