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4AMF
Asym. Unit
Info
Asym.Unit (395 KB)
Biol.Unit 1 (197 KB)
Biol.Unit 2 (194 KB)
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(1)
Title
:
PSEUDOMONAS FLUORESCENS PHOX IN COMPLEX WITH THE SUBSTRATE ANALOGUE APPCP
Authors
:
S. C. Yong, P. Roversi, J. E. D. Lillington, O. B. Zeldin, E. F. Garman, S. B. C. Berks
Date
:
09 Mar 12 (Deposition) - 20 Mar 13 (Release) - 17 Sep 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.52
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase, Alkaline Phosphatase, Phox, Beta- Propeller, Iron, Appcp, Substrate Analogue, Phosphomethylphosphonic Acid Adenylate Ester
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. C. Yong, P. Roversi, J. Lillington, F. Rodriguez, M. Krehenbrink, O. B. Zeldin, E. F. Garman, S. M. Lea, B. C. Berks
A Complex Iron-Calcium Cofactor Catalyzing Phosphotransfer Chemistry
Science V. 345 1170 2014
[
close entry info
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Hetero Components
(6, 30)
Info
All Hetero Components
1a: PHOSPHOMETHYLPHOSPHONIC ACID ADENY... (ACPa)
1b: PHOSPHOMETHYLPHOSPHONIC ACID ADENY... (ACPb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
4a: 1,2-ETHANEDIOL (EDOa)
4b: 1,2-ETHANEDIOL (EDOb)
4c: 1,2-ETHANEDIOL (EDOc)
4d: 1,2-ETHANEDIOL (EDOd)
4e: 1,2-ETHANEDIOL (EDOe)
4f: 1,2-ETHANEDIOL (EDOf)
4g: 1,2-ETHANEDIOL (EDOg)
4h: 1,2-ETHANEDIOL (EDOh)
4i: 1,2-ETHANEDIOL (EDOi)
4j: 1,2-ETHANEDIOL (EDOj)
4k: 1,2-ETHANEDIOL (EDOk)
4l: 1,2-ETHANEDIOL (EDOl)
4m: 1,2-ETHANEDIOL (EDOm)
4n: 1,2-ETHANEDIOL (EDOn)
4o: 1,2-ETHANEDIOL (EDOo)
4p: 1,2-ETHANEDIOL (EDOp)
5a: MU-OXO-DIIRON (FEOa)
5b: MU-OXO-DIIRON (FEOb)
6a: LITHIUM ION (LIa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACP
2
Ligand/Ion
PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2
CA
6
Ligand/Ion
CALCIUM ION
3
CL
3
Ligand/Ion
CHLORIDE ION
4
EDO
16
Ligand/Ion
1,2-ETHANEDIOL
5
FEO
2
Ligand/Ion
MU-OXO-DIIRON
6
LI
1
Ligand/Ion
LITHIUM ION
[
close Hetero Component info
]
Sites
(30, 30)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:90 , GLU A:194 , ASN A:195 , ARG A:223 , ASP A:292 , ARG A:294 , ARG A:385 , GLU A:387 , ASP A:479 , ASP A:494 , CA A:1592 , CA A:1593 , CA A:1594 , FEO A:1595 , HOH A:2161 , HOH A:2164 , HOH A:2305 , HOH A:2322 , HOH A:2325 , HOH A:2330 , HOH A:2419 , HOH A:2425 , HOH A:2582 , HOH A:2637
BINDING SITE FOR RESIDUE ACP A1589
02
AC2
SOFTWARE
ARG A:328 , GLN A:344 , HOH A:2202 , HOH A:2206 , HOH A:2209
BINDING SITE FOR RESIDUE CL A1590
03
AC3
SOFTWARE
GLU A:279 , PRO A:336 , HOH A:2406 , HOH A:2466
BINDING SITE FOR RESIDUE LI A1591
04
AC4
SOFTWARE
GLU A:273 , GLU A:387 , ASP A:479 , ACP A:1589 , FEO A:1595 , HOH A:2131 , HOH A:2132 , HOH A:2571
BINDING SITE FOR RESIDUE CA A1592
05
AC5
SOFTWARE
GLU A:387 , ASP A:479 , ASP A:494 , ACP A:1589 , HOH A:2499
BINDING SITE FOR RESIDUE CA A1593
06
AC6
SOFTWARE
ASP A:494 , GLU A:532 , ACP A:1589 , HOH A:2160 , HOH A:2164
BINDING SITE FOR RESIDUE CA A1594
07
AC7
SOFTWARE
GLU A:90 , CYS A:179 , GLU A:194 , GLU A:273 , ASP A:292 , GLU A:387 , ACP A:1589 , CA A:1592 , HOH A:2132
BINDING SITE FOR RESIDUE FEO A1595
08
AC8
SOFTWARE
VAL A:390 , PHE A:483 , HOH A:2500 , HOH A:2501 , HOH A:2573
BINDING SITE FOR RESIDUE EDO A1597
09
AC9
SOFTWARE
ASN A:93 , TYR A:96 , HIS A:551 , PRO A:552 , PRO A:569 , HOH A:2122 , HOH A:2123
BINDING SITE FOR RESIDUE EDO A1598
10
BC1
SOFTWARE
GLU A:251 , THR A:260 , ARG A:264 , HOH A:2264 , HOH A:2388 , HOH A:2389 , HOH A:2639
BINDING SITE FOR RESIDUE EDO A1599
11
BC2
SOFTWARE
SER A:456 , PRO A:471 , EDO A:1601 , HOH A:2565 , HOH A:2640 , ALA B:18 , ASN B:499 , GLY B:505
BINDING SITE FOR RESIDUE EDO A1600
12
BC3
SOFTWARE
SER A:456 , PRO A:471 , MET A:474 , EDO A:1600 , HOH A:2600 , HOH A:2640 , HOH A:2641 , EDO B:1597 , EDO B:1601
BINDING SITE FOR RESIDUE EDO A1601
13
BC4
SOFTWARE
ASN A:308 , HIS A:309 , ARG A:310 , SER A:467 , ASN A:468 , THR A:518 , HOH A:2602 , HOH A:2642
BINDING SITE FOR RESIDUE EDO A1602
14
BC5
SOFTWARE
GLY A:530 , GLY A:553 , ASN A:555 , GLY A:556 , GLY A:557 , HOH A:2616
BINDING SITE FOR RESIDUE CL A1603
15
BC6
SOFTWARE
SER A:497 , ASN A:508 , ILE A:529 , GLY A:530 , HOH A:2616
BINDING SITE FOR RESIDUE EDO A1604
16
BC7
SOFTWARE
THR A:323 , TYR A:325 , GLU A:347 , LYS A:352 , LYS A:442 , ASN B:566
BINDING SITE FOR RESIDUE EDO A1605
17
BC8
SOFTWARE
PRO A:154 , GLN A:364 , HOH A:2448 , HOH A:2486 , PRO B:565 , ASN B:566 , HOH B:2559
BINDING SITE FOR RESIDUE EDO A1606
18
BC9
SOFTWARE
GLU B:90 , GLU B:194 , ASN B:195 , ARG B:223 , ASP B:292 , ARG B:294 , ARG B:385 , GLU B:387 , ASP B:479 , ASP B:494 , CA B:1590 , CA B:1591 , CA B:1592 , FEO B:1593 , HOH B:2141 , HOH B:2143 , HOH B:2271 , HOH B:2273 , HOH B:2276 , HOH B:2348 , HOH B:2435 , HOH B:2512 , HOH B:2571 , HOH B:2573
BINDING SITE FOR RESIDUE ACP B1589
19
CC1
SOFTWARE
GLU B:273 , GLU B:387 , ASP B:479 , ACP B:1589 , FEO B:1593 , HOH B:2116 , HOH B:2117 , HOH B:2500
BINDING SITE FOR RESIDUE CA B1590
20
CC2
SOFTWARE
GLU B:387 , ASP B:479 , ASP B:494 , ACP B:1589 , HOH B:2436
BINDING SITE FOR RESIDUE CA B1591
21
CC3
SOFTWARE
ASP B:494 , GLU B:532 , ACP B:1589 , HOH B:2139 , HOH B:2143
BINDING SITE FOR RESIDUE CA B1592
22
CC4
SOFTWARE
GLU B:90 , CYS B:179 , GLU B:194 , GLU B:273 , ASP B:292 , GLU B:387 , ACP B:1589 , CA B:1590 , HOH B:2117
BINDING SITE FOR RESIDUE FEO B1593
23
CC5
SOFTWARE
LYS B:183 , LEU B:277 , VAL B:391 , HOH B:2259 , HOH B:2260 , HOH B:2438 , HOH B:2439 , HOH B:2574
BINDING SITE FOR RESIDUE EDO B1595
24
CC6
SOFTWARE
TRP B:38 , ASN B:93 , TYR B:96 , HIS B:551 , PRO B:552 , PRO B:569 , ARG B:570 , HOH B:2112 , HOH B:2113
BINDING SITE FOR RESIDUE EDO B1596
25
CC7
SOFTWARE
ALA A:504 , GLY A:505 , EDO A:1601 , HOH A:2599 , SER B:456 , MET B:474
BINDING SITE FOR RESIDUE EDO B1597
26
CC8
SOFTWARE
GLY B:530 , GLY B:553 , ASN B:555 , GLY B:556 , GLY B:557
BINDING SITE FOR RESIDUE CL B1598
27
CC9
SOFTWARE
ALA A:18 , THR A:20 , ASN A:499 , HOH A:2020 , HOH A:2641 , GLN B:472
BINDING SITE FOR RESIDUE EDO B1599
28
DC1
SOFTWARE
ASN B:140 , PRO B:257 , HOH B:2072
BINDING SITE FOR RESIDUE EDO B1600
29
DC2
SOFTWARE
EDO A:1601 , HOH A:2641 , ILE B:16 , PRO B:17 , GLN B:472 , ARG B:523 , HOH B:2015 , HOH B:2575
BINDING SITE FOR RESIDUE EDO B1601
30
DC3
SOFTWARE
LYS B:183 , HOH B:2574
BINDING SITE FOR RESIDUE EDO B1602
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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]
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Asymmetric Unit 1
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