PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
4ALK
Biol. Unit 1
Info
Asym.Unit (741 KB)
Biol.Unit 1 (364 KB)
Biol.Unit 2 (363 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF S. AUREUS FABI IN COMPLEX WITH NADP AND 5-ETHYL-2-PHENOXYPHENOL
Authors
:
J. Schiebel, A. Chang, P. J. Tonge, C. Kisker
Date
:
04 Mar 12 (Deposition) - 09 May 12 (Release) - 23 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Oxidoreductase, Short-Chain Dehydrogenase/Reductase Superfamily, Fatty Acid Biosynthesis, Lipid Synthesis, Safabi, Fabi
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Schiebel, A. Chang, H. Lu, M. V. Baxter, P. J. Tonge, C. Kisker
Staphylococcus Aureus Fabi: Inhibition, Substrate Recognition And Potential Implications For In Vivo Essentiality
Structure V. 20 802 2012
[
close entry info
]
Hetero Components
(3, 12)
Info
All Hetero Components
1a: 5-ETHYL-2-PHENOXYPHENOL (E9Pa)
1b: 5-ETHYL-2-PHENOXYPHENOL (E9Pb)
1c: 5-ETHYL-2-PHENOXYPHENOL (E9Pc)
1d: 5-ETHYL-2-PHENOXYPHENOL (E9Pd)
1e: 5-ETHYL-2-PHENOXYPHENOL (E9Pe)
1f: 5-ETHYL-2-PHENOXYPHENOL (E9Pf)
1g: 5-ETHYL-2-PHENOXYPHENOL (E9Pg)
1h: 5-ETHYL-2-PHENOXYPHENOL (E9Ph)
2a: GLUTAMIC ACID (GLUa)
2b: GLUTAMIC ACID (GLUb)
2c: GLUTAMIC ACID (GLUc)
2d: GLUTAMIC ACID (GLUd)
2e: GLUTAMIC ACID (GLUe)
2f: GLUTAMIC ACID (GLUf)
2g: GLUTAMIC ACID (GLUg)
2h: GLUTAMIC ACID (GLUh)
3a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
3b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
3c: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPc)
3d: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPd)
3e: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPe)
3f: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPf)
3g: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPg)
3h: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
E9P
4
Ligand/Ion
5-ETHYL-2-PHENOXYPHENOL
2
GLU
4
Mod. Amino Acid
GLUTAMIC ACID
3
NAP
4
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
[
close Hetero Component info
]
Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC6 (SOFTWARE)
15: BC7 (SOFTWARE)
16: BC9 (SOFTWARE)
17: CC1 (SOFTWARE)
18: CC2 (SOFTWARE)
19: CC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:13 , ILE A:14 , ALA A:15 , SER A:19 , ILE A:20 , ARG A:40 , LYS A:41 , SER A:44 , ILE A:65 , ASP A:66 , VAL A:67 , SER A:93 , ILE A:94 , ALA A:95 , ILE A:120 , THR A:145 , THR A:146 , TYR A:147 , LYS A:164 , ALA A:190 , GLY A:191 , PRO A:192 , ILE A:193 , THR A:195 , SER A:197 , E9P A:1001 , HOH A:2011 , HOH A:2012 , HOH A:2013 , HOH A:2015 , HOH D:2112 , GLU E:100
BINDING SITE FOR RESIDUE NAP A 400
02
AC2
SOFTWARE
LEU A:102 , TYR A:147 , TYR A:157 , LYS A:164 , SER A:197 , NAP A:400
BINDING SITE FOR RESIDUE E9P A1001
03
AC3
SOFTWARE
ARG A:103 , ASN A:156 , VAL A:201 , GLY A:202 , GLY A:203 , PHE A:204 , ASN A:205 , HOH C:2174
BINDING SITE FOR RESIDUE GLU A1002
04
AC4
SOFTWARE
GLY B:13 , ILE B:14 , ALA B:15 , SER B:19 , ILE B:20 , ARG B:40 , LYS B:41 , SER B:44 , ILE B:65 , ASP B:66 , VAL B:67 , SER B:93 , ILE B:94 , ALA B:95 , ILE B:120 , THR B:145 , THR B:146 , TYR B:147 , LYS B:164 , ALA B:190 , PRO B:192 , ILE B:193 , THR B:195 , SER B:197 , E9P B:1001 , HOH B:2014 , HOH B:2015 , HOH B:2016 , HOH B:2019 , HOH B:2197 , GLU G:100
BINDING SITE FOR RESIDUE NAP B 400
05
AC5
SOFTWARE
ALA B:95 , TYR B:147 , TYR B:157 , LYS B:164 , SER B:197 , NAP B:400
BINDING SITE FOR RESIDUE E9P B1001
06
AC6
SOFTWARE
ARG B:103 , GLY B:203 , LYS G:199
BINDING SITE FOR RESIDUE GLU B1002
07
AC7
SOFTWARE
GLY C:13 , ILE C:14 , ALA C:15 , SER C:19 , ILE C:20 , ARG C:40 , LYS C:41 , SER C:44 , ILE C:65 , ASP C:66 , VAL C:67 , SER C:93 , ILE C:94 , ALA C:95 , ILE C:120 , THR C:145 , THR C:146 , LYS C:164 , ALA C:190 , GLY C:191 , PRO C:192 , ILE C:193 , THR C:195 , SER C:197 , E9P C:1001 , HOH C:2007 , HOH C:2008 , HOH C:2009 , HOH C:2011 , HOH C:2172 , GLU F:100
BINDING SITE FOR RESIDUE NAP C 400
08
AC8
SOFTWARE
LEU C:102 , TYR C:147 , TYR C:157 , MET C:160 , SER C:197 , ALA C:198 , NAP C:400
BINDING SITE FOR RESIDUE E9P C1001
09
AC9
SOFTWARE
LYS C:7 , ASP C:88 , GLY C:140 , ARG C:184 , LEU C:234
BINDING SITE FOR RESIDUE GLU C1002
10
BC1
SOFTWARE
HOH A:2229 , HOH A:2230 , HOH A:2231 , HOH A:2232 , HOH A:2233 , GLY D:13 , ILE D:14 , ALA D:15 , SER D:19 , ILE D:20 , ARG D:40 , LYS D:41 , SER D:44 , ILE D:65 , ASP D:66 , VAL D:67 , SER D:93 , ILE D:94 , ALA D:95 , ILE D:120 , THR D:145 , THR D:146 , TYR D:147 , LYS D:164 , ALA D:190 , GLY D:191 , PRO D:192 , ILE D:193 , THR D:195 , LEU D:196 , SER D:197 , E9P D:1001
BINDING SITE FOR RESIDUE NAP D 400
11
BC2
SOFTWARE
TYR D:147 , TYR D:157 , SER D:197 , ALA D:198 , VAL D:201 , NAP D:400
BINDING SITE FOR RESIDUE E9P D1001
12
BC3
SOFTWARE
ARG C:103 , ALA C:198 , LYS C:199 , VAL C:201 , GLY C:202 , GLY C:203 , PHE C:204 , ASN C:205 , LYS F:199 , GLU F:1002 , HOH F:2143
BINDING SITE FOR RESIDUE GLU D1002
13
BC4
SOFTWARE
GLU A:100 , HOH A:2111 , GLY E:13 , ILE E:14 , ALA E:15 , SER E:19 , ILE E:20 , ARG E:40 , LYS E:41 , SER E:44 , ILE E:65 , ASP E:66 , VAL E:67 , SER E:93 , ILE E:94 , ALA E:95 , ILE E:120 , THR E:145 , THR E:146 , LYS E:164 , ALA E:190 , GLY E:191 , PRO E:192 , ILE E:193 , THR E:195 , SER E:197 , E9P E:1001 , HOH E:2009 , HOH E:2010 , HOH E:2011 , HOH E:2012 , HOH E:2080
BINDING SITE FOR RESIDUE NAP E 400
14
BC6
SOFTWARE
LYS A:199 , ARG E:103 , ALA E:198 , LYS E:199 , VAL E:201 , GLY E:202 , GLY E:203 , PHE E:204 , ASN E:205 , HOH E:2154 , HOH F:2180
BINDING SITE FOR RESIDUE GLU E1002
15
BC7
SOFTWARE
GLU C:100 , HOH E:2195 , HOH E:2196 , HOH E:2197 , HOH E:2199 , HOH E:2200 , GLY F:13 , ILE F:14 , ALA F:15 , SER F:19 , ILE F:20 , ARG F:40 , LYS F:41 , SER F:44 , ILE F:65 , ASP F:66 , VAL F:67 , SER F:93 , ILE F:94 , ALA F:95 , ILE F:120 , THR F:145 , THR F:146 , TYR F:147 , LYS F:164 , ALA F:190 , GLY F:191 , PRO F:192 , ILE F:193 , THR F:195 , SER F:197 , E9P F:1001
BINDING SITE FOR RESIDUE NAP F 400
16
BC9
SOFTWARE
LYS C:199 , GLU D:1002 , ARG F:103 , ALA F:198 , LYS F:199 , VAL F:201 , GLY F:203 , PHE F:204 , ASN F:205
BINDING SITE FOR RESIDUE GLU F1002
17
CC1
SOFTWARE
HOH B:2198 , HOH B:2201 , HOH B:2202 , ASP F:88 , GLY F:140 , ASN F:182 , ARG F:184 , LEU F:234
BINDING SITE FOR RESIDUE GLU F1003
18
CC2
SOFTWARE
GLU B:100 , GLY G:13 , ILE G:14 , ALA G:15 , SER G:19 , ILE G:20 , ARG G:40 , LYS G:41 , SER G:44 , ILE G:65 , ASP G:66 , VAL G:67 , SER G:93 , ILE G:94 , ALA G:95 , ILE G:120 , THR G:145 , THR G:146 , TYR G:147 , LYS G:164 , ALA G:190 , GLY G:191 , PRO G:192 , ILE G:193 , THR G:195 , SER G:197 , E9P G:1001 , HOH G:2009 , HOH G:2010 , HOH G:2011 , HOH G:2013 , HOH H:2109
BINDING SITE FOR RESIDUE NAP G 400
19
CC4
SOFTWARE
LYS B:199 , ARG G:103 , VAL G:201 , GLY G:203 , PHE G:204 , ASN G:205
BINDING SITE FOR RESIDUE GLU G1002
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (741 KB)
Header - Asym.Unit
Biol.Unit 1 (364 KB)
Header - Biol.Unit 1
Biol.Unit 2 (363 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4ALK
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help