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4ALH
Asym. Unit
Info
Asym.Unit (130 KB)
Biol.Unit 1 (85 KB)
Biol.Unit 2 (81 KB)
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(1)
Title
:
N-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH 3,5 DIMETHYL-4-PHENYL-1,2-OXAZOLE
Authors
:
C. W. Chung, P. Bamborough
Date
:
03 Mar 12 (Deposition) - 11 Apr 12 (Release) - 11 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.97
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C (2x)
Keywords
:
Signaling Protein-Inhibitor Complex, Histone, Epigenetic Reader
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Bamborough, H. Diallo, J. D. Goodacre, L. Gordon, A. Lewis, J. T. Seal, D. M. Wilson, M. D. Woodrow, C. W. Chung
Fragment-Based Discovery Of Bromodomain Inhibitors Part 2: Optimization Of Phenylisoxazole Sulfonamides.
J. Med. Chem. V. 55 587 2012
[
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: 3,5 DIMETHYL-4-PHENYL-1,2-OXAZOLE (A9Pa)
1b: 3,5 DIMETHYL-4-PHENYL-1,2-OXAZOLE (A9Pb)
1c: 3,5 DIMETHYL-4-PHENYL-1,2-OXAZOLE (A9Pc)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
A9P
3
Ligand/Ion
3,5 DIMETHYL-4-PHENYL-1,2-OXAZOLE
2
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
3
SO4
4
Ligand/Ion
SULFATE ION
[
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:94 , HOH A:2130 , TRP B:97
BINDING SITE FOR RESIDUE EDO A1183
2
AC2
SOFTWARE
TRP A:97 , A9P A:1185 , HOH A:2114 , HOH A:2132 , GLN B:94
BINDING SITE FOR RESIDUE EDO A1184
3
AC3
SOFTWARE
PRO A:98 , PHE A:99 , LEU A:108 , LEU A:110 , ASN A:156 , EDO A:1184 , HOH A:2066
BINDING SITE FOR RESIDUE A9P A1185
4
AC4
SOFTWARE
PRO B:98 , PHE B:99 , ASN B:156 , HOH B:2033
BINDING SITE FOR RESIDUE A9P B1184
5
AC5
SOFTWARE
PRO C:98 , LEU C:108 , LEU C:110 , ASN C:156 , HOH C:2028
BINDING SITE FOR RESIDUE A9P C1183
6
AC6
SOFTWARE
ARG B:100 , HOH B:2010 , ARG C:128 , ASN C:132 , TYR C:134 , HOH C:2043 , HOH C:2073
BINDING SITE FOR RESIDUE SO4 C1184
7
AC7
SOFTWARE
ARG A:100 , HOH A:2025 , HOH A:2027
BINDING SITE FOR RESIDUE SO4 A1186
8
AC8
SOFTWARE
ARG A:129
BINDING SITE FOR RESIDUE SO4 A1187
9
AC9
SOFTWARE
GLN A:167 , LYS A:171 , LEU A:174 , GLN B:143 , ASN B:146 , THR B:147 , HOH B:2096
BINDING SITE FOR RESIDUE SO4 B1185
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 6)
Info
All PROSITE Patterns/Profiles
1: BROMODOMAIN_2 (A:91-163,B:91-163,C:91-163|-)
2: BROMODOMAIN_1 (A:96-155,B:96-155,C:96-155|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BROMODOMAIN_2
PS50014
Bromodomain profile.
BRD2_HUMAN
91-163
364-436
3
A:91-163
B:91-163
C:91-163
-
2
BROMODOMAIN_1
PS00633
Bromodomain signature.
BRD2_HUMAN
96-155
369-428
3
A:96-155
B:96-155
C:96-155
-
[
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]
Exons
(3, 9)
Info
All Exons
Exon 1.16e (A:75-111 | B:76-111 | C:76-111)
Exon 1.17 (A:112-157 | B:112-157 | C:112-157)
Exon 1.18a (A:158-182 | B:158-183 | C:158-182)
View:
Select:
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All Exon Boundaries
1: Boundary 1.13b/1.16e
2: Boundary 1.16e/1.17
3: Boundary 1.17/1.18a
4: Boundary 1.18a/1.19
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.7b
ENST00000399529
7b
ENSE00001705137
HSCHR6_MHC_QBL:32865184-32865580
397
BRD2_HUMAN
-
0
0
-
-
1.13b
ENST00000399529
13b
ENSE00002152230
HSCHR6_MHC_QBL:32868119-32869451
1333
BRD2_HUMAN
1-10
10
0
-
-
1.16e
ENST00000399529
16e
ENSE00001730437
HSCHR6_MHC_QBL:32870986-32871289
304
BRD2_HUMAN
10-111
102
3
A:75-111
B:76-111
C:76-111
37
36
36
1.17
ENST00000399529
17
ENSE00001742408
HSCHR6_MHC_QBL:32871904-32872041
138
BRD2_HUMAN
112-157
46
3
A:112-157
B:112-157
C:112-157
46
46
46
1.18a
ENST00000399529
18a
ENSE00001669691
HSCHR6_MHC_QBL:32872548-32872686
139
BRD2_HUMAN
158-204
47
3
A:158-182
B:158-183
C:158-182
25
26
25
1.19
ENST00000399529
19
ENSE00001606367
HSCHR6_MHC_QBL:32872768-32872982
215
BRD2_HUMAN
204-275
72
0
-
-
1.20b
ENST00000399529
20b
ENSE00002150037
HSCHR6_MHC_QBL:32873080-32873454
375
BRD2_HUMAN
276-400
125
0
-
-
1.20g
ENST00000399529
20g
ENSE00001741071
HSCHR6_MHC_QBL:32873960-32874088
129
BRD2_HUMAN
401-443
43
0
-
-
1.21b
ENST00000399529
21b
ENSE00001731564
HSCHR6_MHC_QBL:32874275-32874523
249
BRD2_HUMAN
444-526
83
0
-
-
1.22c
ENST00000399529
22c
ENSE00001594402
HSCHR6_MHC_QBL:32874644-32874906
263
BRD2_HUMAN
527-614
88
0
-
-
1.24c
ENST00000399529
24c
ENSE00001800691
HSCHR6_MHC_QBL:32876345-32876649
305
BRD2_HUMAN
614-716
103
0
-
-
1.24d
ENST00000399529
24d
ENSE00001781532
HSCHR6_MHC_QBL:32876859-32876981
123
BRD2_HUMAN
716-757
42
0
-
-
1.25d
ENST00000399529
25d
ENSE00001732199
HSCHR6_MHC_QBL:32877099-32878022
924
BRD2_HUMAN
757-801
45
0
-
-
[
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]
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d4alha_ (A:)
1b: SCOP_d4alhb_ (B:)
1c: SCOP_d4alhc_ (C:)
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Protein Domains
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(
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Organisms
(
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
Bromodomain-like
(339)
Superfamily
:
Bromodomain
(203)
Family
:
automated matches
(169)
Protein domain
:
automated matches
(169)
Human (Homo sapiens) [TaxId: 9606]
(162)
1a
d4alha_
A:
1b
d4alhb_
B:
1c
d4alhc_
C:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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