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4AKO
Asym. Unit
Info
Asym.Unit (103 KB)
Biol.Unit 1 (98 KB)
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(1)
Title
:
MUTATIONS IN THE NEIGHBOURHOOD OF COTA-LACCASE TRINUCLEAR SITE: E498L MUTANT
Authors
:
C. S. Silva, Z. Chen, P. Durao, M. M. Pereira, S. Todorovic, P. Hildebran L. O. Martins, P. F. Lindley, I. Bento
Date
:
28 Feb 12 (Deposition) - 14 Mar 12 (Release) - 14 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Oxidoreductase, Multi-Copper Oxidase, Trinuclear Cluster, Oxygen Reduction
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. Chen, P. Durao, C. S. Silva, M. M. Pereira, S. Todorovic, P. Hildebrandt, I. Bento, P. F. Lindley, L. O. Martins
The Role Of Glu498 In The Dioxygen Reactivity Of Cota- Laccase From Bacillus Subtilis.
Dalton Trans V. 39 2875 2010
[
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Hetero Components
(4, 26)
Info
All Hetero Components
1a: S-OXY CYSTEINE (CSXa)
2a: COPPER (II) ION (CUa)
2b: COPPER (II) ION (CUb)
2c: COPPER (II) ION (CUc)
2d: COPPER (II) ION (CUd)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
3n: 1,2-ETHANEDIOL (EDOn)
3o: 1,2-ETHANEDIOL (EDOo)
3p: 1,2-ETHANEDIOL (EDOp)
3q: 1,2-ETHANEDIOL (EDOq)
3r: 1,2-ETHANEDIOL (EDOr)
3s: 1,2-ETHANEDIOL (EDOs)
3t: 1,2-ETHANEDIOL (EDOt)
4a: OXYGEN MOLECULE (OXYa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CSX
1
Mod. Amino Acid
S-OXY CYSTEINE
2
CU
4
Ligand/Ion
COPPER (II) ION
3
EDO
20
Ligand/Ion
1,2-ETHANEDIOL
4
OXY
1
Ligand/Ion
OXYGEN MOLECULE
[
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Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:419 , CYS A:492 , HIS A:497 , MET A:502
BINDING SITE FOR RESIDUE CU A 601
02
AC2
SOFTWARE
HIS A:107 , HIS A:153 , HIS A:493 , OXY A:605
BINDING SITE FOR RESIDUE CU A 602
03
AC3
SOFTWARE
HIS A:155 , HIS A:424 , HIS A:491 , OXY A:605
BINDING SITE FOR RESIDUE CU A 603
04
AC4
SOFTWARE
HIS A:105 , HIS A:107 , HIS A:422 , HIS A:424 , OXY A:605 , HOH A:2189
BINDING SITE FOR RESIDUE CU A 604
05
AC5
SOFTWARE
HIS A:105 , HIS A:107 , HIS A:153 , HIS A:155 , HIS A:422 , HIS A:424 , HIS A:491 , HIS A:493 , CU A:602 , CU A:603 , CU A:604
BINDING SITE FOR RESIDUE OXY A 605
06
AC6
SOFTWARE
ASP A:113 , TYR A:133 , LYS A:135 , HOH A:2550
BINDING SITE FOR RESIDUE EDO A1512
07
AC7
SOFTWARE
LYS A:25 , TYR A:69 , VAL A:138 , THR A:307 , ALA A:308 , TYR A:309 , GLU A:310 , HOH A:2551
BINDING SITE FOR RESIDUE EDO A1513
08
AC8
SOFTWARE
ASN A:74 , LEU A:76 , PRO A:77 , VAL A:100 , SER A:124 , LYS A:125 , HOH A:2156
BINDING SITE FOR RESIDUE EDO A1514
09
AC9
SOFTWARE
GLU A:188 , GLU A:244 , TYR A:250 , HOH A:2295
BINDING SITE FOR RESIDUE EDO A1515
10
BC1
SOFTWARE
ARG A:136 , GLU A:137 , VAL A:138 , PRO A:247 , LEU A:343 , HOH A:2244 , HOH A:2552
BINDING SITE FOR RESIDUE EDO A1516
11
BC2
SOFTWARE
PHE A:292 , SER A:293 , TYR A:300 , HOH A:2530
BINDING SITE FOR RESIDUE EDO A1517
12
BC3
SOFTWARE
GLU A:61 , ILE A:173 , HIS A:175 , ASP A:190 , HOH A:2119 , HOH A:2291 , HOH A:2292 , HOH A:2554
BINDING SITE FOR RESIDUE EDO A1518
13
BC4
SOFTWARE
ASP A:268 , ALA A:317 , PRO A:328 , ALA A:332 , ASN A:333 , HOH A:2370 , HOH A:2555
BINDING SITE FOR RESIDUE EDO A1519
14
BC5
SOFTWARE
LYS A:183 , LEU A:184 , SER A:186 , GLU A:348 , SER A:349 , EDO A:1531 , HOH A:2290
BINDING SITE FOR RESIDUE EDO A1520
15
BC6
SOFTWARE
ILE A:200 , HOH A:2002
BINDING SITE FOR RESIDUE EDO A1521
16
BC7
SOFTWARE
GLN A:362 , ARG A:429 , ALA A:478 , THR A:480 , HOH A:2446 , HOH A:2502
BINDING SITE FOR RESIDUE EDO A1522
17
BC8
SOFTWARE
HIS A:37 , GLN A:38
BINDING SITE FOR RESIDUE EDO A1523
18
BC9
SOFTWARE
THR A:130 , GLY A:131 , PHE A:134 , LYS A:346 , GLU A:348 , HOH A:2236
BINDING SITE FOR RESIDUE EDO A1524
19
CC1
SOFTWARE
PRO A:352 , LYS A:353 , TYR A:354 , ASN A:390 , HOH A:2438 , HOH A:2462
BINDING SITE FOR RESIDUE EDO A1525
20
CC2
SOFTWARE
ASN A:75 , LYS A:125 , GLN A:367 , LYS A:402 , HOH A:2456
BINDING SITE FOR RESIDUE EDO A1526
21
CC3
SOFTWARE
ARG A:64 , ARG A:146 , HOH A:2129 , HOH A:2258 , HOH A:2440 , HOH A:2442
BINDING SITE FOR RESIDUE EDO A1527
22
CC4
SOFTWARE
ASN A:269 , GLY A:271 , ASP A:272 , ILE A:304 , ASP A:305 , TYR A:309
BINDING SITE FOR RESIDUE EDO A1528
23
CC5
SOFTWARE
TYR A:354 , LEU A:355 , ALA A:356 , THR A:377 , HOH A:2384
BINDING SITE FOR RESIDUE EDO A1529
24
CC6
SOFTWARE
PHE A:81 , LEU A:206 , PHE A:207 , TYR A:208 , HOH A:2160 , HOH A:2311 , HOH A:2321
BINDING SITE FOR RESIDUE EDO A1530
25
CC7
SOFTWARE
ASP A:187 , TYR A:189 , GLN A:345 , EDO A:1520 , HOH A:2294 , HOH A:2351
BINDING SITE FOR RESIDUE EDO A1531
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d4akoa1 (A:2-182)
1b: SCOP_d4akoa2 (A:183-356)
1c: SCOP_d4akoa3 (A:357-511)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
automated matches
(57)
Protein domain
:
automated matches
(57)
Bacillus subtilis [TaxId: 1423]
(7)
1a
d4akoa1
A:2-182
1b
d4akoa2
A:183-356
1c
d4akoa3
A:357-511
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
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all PFAM domains
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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