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4AKN
Asym. Unit
Info
Asym.Unit (133 KB)
Biol.Unit 1 (87 KB)
Biol.Unit 2 (82 KB)
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(1)
Title
:
N-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH TBUTYL-PHENYL-AMINO-DIMETHYL-OXAZOLYL-QUINOLINE-CARBOXYLIC ACID
Authors
:
C. Chung, Y. Lamotte, F. Donche, A. Bouillot, O. Mirguet
Date
:
26 Feb 12 (Deposition) - 04 Jul 12 (Release) - 14 Nov 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.82
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C (2x)
Keywords
:
Protein Binding, Inhibitor, Histone, Epigenetic Reader
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Seal, Y. Lamotte, F. Donche, A. Bouillot, O. Mirguet, F. Gellibert, E. Nicodeme, G. Krysa, J. Kirilovsky, S. Beinke, S. Mccleary, I. Rioja P. Bamborough, C. Chung, L. Gordon, T. Lewis, A. L. Walker, L. Cutler, D. Lugo, D. M. Wilson, J. Witherington, K. Lee, R. K. Prinjha
Identification Of A Novel Series Of Bet Family Bromodomain Inhibitors: Binding Mode And Profile Of I-Bet151 (Gsk1210151A).
Bioorg. Med. Chem. Lett. V. 22 2968 2012
[
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Hetero Components
(4, 7)
Info
All Hetero Components
1a: DIMETHYL SULFOXIDE (DMSa)
2a: 1,2-ETHANEDIOL (EDOa)
3a: 4-[(2-TERT-BUTYLPHENYL)AMINO]-7-(3... (S5Ba)
3b: 4-[(2-TERT-BUTYLPHENYL)AMINO]-7-(3... (S5Bb)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DMS
1
Ligand/Ion
DIMETHYL SULFOXIDE
2
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
3
S5B
2
Ligand/Ion
4-[(2-TERT-BUTYLPHENYL)AMINO]-7-(3,5- DIMETHYL-1,2-OXAZOL-4-YL)QUINOLINE-3-CARBOXYLIC ACID
4
SO4
3
Ligand/Ion
SULFATE ION
[
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:146 , THR A:150 , TYR A:153 , GLU A:170 , HOH A:2140 , ASN B:146 , THR B:150 , TYR B:153 , GLU B:170
BINDING SITE FOR RESIDUE EDO A1187
2
AC2
SOFTWARE
TRP A:97 , PRO A:98 , PHE A:99 , LEU A:108 , LEU A:110 , ASN A:156 , HOH A:2029 , HOH A:2034 , HOH A:2063 , GLN B:94
BINDING SITE FOR RESIDUE S5B A1188
3
AC3
SOFTWARE
ARG A:100 , HOH A:2020 , HOH A:2022 , HOH A:2141
BINDING SITE FOR RESIDUE SO4 A1189
4
AC4
SOFTWARE
THR A:125 , ARG A:128 , ARG A:129 , HOH A:2144
BINDING SITE FOR RESIDUE SO4 A1190
5
AC5
SOFTWARE
GLN A:94 , TRP B:97 , PHE B:99 , LYS B:107 , LEU B:108 , ASN B:156 , HOH B:2022 , HOH B:2040
BINDING SITE FOR RESIDUE S5B B1184
6
AC6
SOFTWARE
VAL C:103 , ASN C:156 , ILE C:162 , HOH C:2024 , HOH C:2067
BINDING SITE FOR RESIDUE DMS C1183
7
AC7
SOFTWARE
ARG B:100 , HOH B:2014 , HOH B:2015 , ARG C:128 , ASN C:132 , TYR C:134 , HOH C:2047 , HOH C:2079
BINDING SITE FOR RESIDUE SO4 C1184
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 6)
Info
All PROSITE Patterns/Profiles
1: BROMODOMAIN_2 (A:91-163,B:91-163,C:91-163|-)
2: BROMODOMAIN_1 (A:96-155,B:96-155,C:96-155|-)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BROMODOMAIN_2
PS50014
Bromodomain profile.
BRD2_HUMAN
91-163
364-436
3
A:91-163
B:91-163
C:91-163
-
2
BROMODOMAIN_1
PS00633
Bromodomain signature.
BRD2_HUMAN
96-155
369-428
3
A:96-155
B:96-155
C:96-155
-
[
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Exons
(3, 9)
Info
All Exons
Exon 1.16e (A:75-111 | B:73-111 | C:76-111)
Exon 1.17 (A:112-157 | B:112-157 | C:112-157)
Exon 1.18a (A:158-186 | B:158-183 | C:158-182)
View:
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All Exon Boundaries
1: Boundary 1.13b/1.16e
2: Boundary 1.16e/1.17
3: Boundary 1.17/1.18a
4: Boundary 1.18a/1.19
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.7b
ENST00000399529
7b
ENSE00001705137
HSCHR6_MHC_QBL:32865184-32865580
397
BRD2_HUMAN
-
0
0
-
-
1.13b
ENST00000399529
13b
ENSE00002152230
HSCHR6_MHC_QBL:32868119-32869451
1333
BRD2_HUMAN
1-10
10
0
-
-
1.16e
ENST00000399529
16e
ENSE00001730437
HSCHR6_MHC_QBL:32870986-32871289
304
BRD2_HUMAN
10-111
102
3
A:75-111
B:73-111
C:76-111
37
39
36
1.17
ENST00000399529
17
ENSE00001742408
HSCHR6_MHC_QBL:32871904-32872041
138
BRD2_HUMAN
112-157
46
3
A:112-157
B:112-157
C:112-157
46
46
46
1.18a
ENST00000399529
18a
ENSE00001669691
HSCHR6_MHC_QBL:32872548-32872686
139
BRD2_HUMAN
158-204
47
3
A:158-186
B:158-183
C:158-182
29
26
25
1.19
ENST00000399529
19
ENSE00001606367
HSCHR6_MHC_QBL:32872768-32872982
215
BRD2_HUMAN
204-275
72
0
-
-
1.20b
ENST00000399529
20b
ENSE00002150037
HSCHR6_MHC_QBL:32873080-32873454
375
BRD2_HUMAN
276-400
125
0
-
-
1.20g
ENST00000399529
20g
ENSE00001741071
HSCHR6_MHC_QBL:32873960-32874088
129
BRD2_HUMAN
401-443
43
0
-
-
1.21b
ENST00000399529
21b
ENSE00001731564
HSCHR6_MHC_QBL:32874275-32874523
249
BRD2_HUMAN
444-526
83
0
-
-
1.22c
ENST00000399529
22c
ENSE00001594402
HSCHR6_MHC_QBL:32874644-32874906
263
BRD2_HUMAN
527-614
88
0
-
-
1.24c
ENST00000399529
24c
ENSE00001800691
HSCHR6_MHC_QBL:32876345-32876649
305
BRD2_HUMAN
614-716
103
0
-
-
1.24d
ENST00000399529
24d
ENSE00001781532
HSCHR6_MHC_QBL:32876859-32876981
123
BRD2_HUMAN
716-757
42
0
-
-
1.25d
ENST00000399529
25d
ENSE00001732199
HSCHR6_MHC_QBL:32877099-32878022
924
BRD2_HUMAN
757-801
45
0
-
-
[
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SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d4akna_ (A:)
1b: SCOP_d4aknb_ (B:)
1c: SCOP_d4aknc_ (C:)
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Protein Domains
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(
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Organisms
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
Bromodomain-like
(339)
Superfamily
:
Bromodomain
(203)
Family
:
automated matches
(169)
Protein domain
:
automated matches
(169)
Human (Homo sapiens) [TaxId: 9606]
(162)
1a
d4akna_
A:
1b
d4aknb_
B:
1c
d4aknc_
C:
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (133 KB)
Header - Asym.Unit
Biol.Unit 1 (87 KB)
Header - Biol.Unit 1
Biol.Unit 2 (82 KB)
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